RNA id: TU1142905


Basic Information

Item Value
RNA id TU1142905
length 474
RNA type TUCP
GC content 0.49
exon number 1
gene id G1004487
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 63801529 ~ 63802002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagcctgttcaacctctctttcgtgtcgtctgagattcccaaagattggaaagcagctgtggtcatccccctcttcaaagggggggacactcttgacccaaactgctacagacctatatctatcctaccctgcccctctaaggtcttcgaaagccaagtcaacaaacagattgccgaccattttgaatcctaccataccttctccgctatgcaatctggtttcagagctggtcatgggtgcacctcagtcacgctcaaggtcctaaacgatatcttaaccaccatcgataagaaacaatactgtgcagccgtattcattgacctggccaaggctttcgactctgtcaatcaccacatcctcatcggcagactcgacagccttggtttctcaaagtattgcctcgcctggttcactaactacttcacTGATggagacgacaccattctgtatacttctggcccttctttggacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1142793 lncRNA downstream 174811 63625605 ~ 63626718 (-) True G1004385
TU1142610 lncRNA downstream 205543 63595756 ~ 63595986 (-) True G1004226
TU1142609 lncRNA downstream 206168 63595044 ~ 63595361 (-) True G1004225
TU1142575 lncRNA downstream 240351 63560838 ~ 63561178 (-) True G1004191
TU1142567 lncRNA downstream 248231 63552161 ~ 63553298 (-) True atad1a
TU1142919 lncRNA upstream 9473 63811475 ~ 63811750 (-) True G1004501
TU1142924 lncRNA upstream 16634 63818636 ~ 63818863 (-) True G1004506
TU1142929 lncRNA upstream 19550 63821552 ~ 63821790 (-) True G1004511
TU1143010 lncRNA upstream 80728 63882730 ~ 63883012 (-) True G1004590
TU1143791 lncRNA upstream 117278 63919280 ~ 63920053 (-) True G1005304
XM_021621859.2 mRNA downstream 43109 63628512 ~ 63758420 (-) True LOC110536222
XM_021621858.2 mRNA downstream 45493 63628512 ~ 63756036 (-) False LOC110536222
XM_021621856.2 mRNA downstream 242521 63552913 ~ 63559008 (-) False atad1a
LOC110535092 mRNA downstream 393365 63374900 ~ 63408164 (-) True LOC110535092
XM_021621850.2 mRNA downstream 454021 63320014 ~ 63347508 (-) False LOC110536219
XM_021621872.2 mRNA upstream 646160 64448162 ~ 64472943 (-) True LOC110536227
XM_021621880.2 mRNA upstream 707356 64509358 ~ 64516328 (-) False LOC110536230
XR_005034718.1 mRNA upstream 707356 64509358 ~ 64516328 (-) True LOC110536230
XM_021621885.2 mRNA upstream 834217 64636219 ~ 64642138 (-) False LOC110536235
XM_021621886.2 mRNA upstream 834217 64636219 ~ 64642155 (-) True LOC110536235
TU1141652 other downstream 1055281 62740236 ~ 62746248 (-) True LOC110536206
TU1141716 other downstream 1112207 62686550 ~ 62689322 (-) True LOC110536201
TU1141098 other downstream 2160098 61636358 ~ 61641431 (-) True LOC110536162
TU1141093 other downstream 2206119 61592427 ~ 61595410 (-) True mrps36
TU1141091 other downstream 2206193 61592427 ~ 61595336 (-) False mrps36
TU1144129 other upstream 558762 64360764 ~ 64363777 (-) False G1005628
TU1144127 other upstream 559237 64361239 ~ 64363777 (-) True G1005628
TU1144632 other upstream 1296958 65098960 ~ 65099556 (-) True G1006106
TU1146168 other upstream 2570640 66372642 ~ 66372949 (-) True G1007506
TU1148585 other upstream 4169069 67971071 ~ 67971328 (-) True G1009720

Expression Profile