RNA id: TU1148874


Basic Information

Item Value
RNA id TU1148874
length 2051
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G1009990
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68443649 ~ 68447274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTATTTCCTTTAGTATCCTAGTATCAAAATCACCAGAGACATCAATCATTGTCACTATGATAATTATCATATTAAACAATACTTTTATCAAGACATTTGGAGATTCAACCTGACTAAAGATTTACAGTAGTAATAGTTATCACTGCTAAGATCTCTCTTTGAATTGTAGGATGCTACACAGATCTACTGAAAATGCAATGCACCGGCCCCTACATGACTTTGTAGAAAGTTAAATAAGACAGACAATATGAGATCGTTGAGCGTCCCCCTCATCCCAAAATACAATCACTTCCCAACATGAGGCGTCAGAGCAATCAGAGCTCCATCAATCAATCATCAAAACTCAAATCAGCTTCCCCAACACAGAGCAGAGCGCAGAGAGCAGAGAACCAAGCAACGGCTgagtcccaaatcacaccctttTCCCcatagggcactggtcaaaagtaatgcacaatatagggaatgttgtgctatttgggatgcatatAATCTCTCTGGATAAAGTGGCAGCAGAATCAATGTGGGATAAACTCATCAATTAAAAATAGGATGTAAGTTCATGGATATGTCTTGTTTTGTTATTGGTGATGACAGAAGGTTTCATTTTGTATTAATAGAACTTGTGAGGCGTTGAAGACGGACGTCTTGATTTGTGTAATTATATTTCTCCTTAGAGAAATGGAAATGGCTGTTTCATTGGCCAGGATGAGAAGTCAAACCACGATGAGCAGTCAGTGCACGCGTTGCTTGGTCTGGCTCCAGCATAATACATTACACTGACTGCATTccctactggtcaaaagtagtgcactaaatagggaatagtttgccatttgggacacaggcactAGCTCTCATCCGAAAAAGACAAAACTTCTCATTCATGTCTCTTTTGTTGCAACTGTAAAATTCTAATATCTATCCATGCCTGACATCTTAACTACCATCACAAATCACTTGTAGTGCGCCAACTCACAAAGGAGATTGCGATAGCCTTCATACAGTAAAGTACTCTTCTTAGCTTTCCTGGAGTCCATATACCATTTGGGTCACATCCCACATATTATATATAAACCATATCTTAAAGCATAACCATACATCAATGATTCATTAAAAGGGATTTCATTTACTGTATTTCACTGTTCTCAATTCATTCATTGTACTCAATTAACTGTATTTCCATTTCCCATTACAATCCTATTTGTGTTAAAACAGAGGCATCAAATATTTCCCATTGGAAGTCTTTTGATACAGTTACAATTAATGTATTGGTCATTCTTAAACCTAATCTGTCCCTGGGTCTGCCTTAAAGACAGGTACCAGTGAAGActctgaggagaggaggaaggggaaggcCAGCTGAGCAAGATACACACATGCTCATCTACTATAGCACTGTACCGCACATATCAAATGTGTGTAAGGTAAAGCTACGCTGTATATGTCactgcctcactctctctctctctctctctctctgtaactctctctctacttcaataTCAAAGTGAGTAATGTTGGAGATTGCTGTGCCTTAGGGACAGTGTCCAGTTGGGACCAAAACAATGCAAAACACATTTTCTAATAACAGTATAGGAAATATTAAAACGTCTATTGCTACAGGATATAGGGGTTGTATCCTTggtgtgtcacacaacacacatGAACAGTTTTGTAAAGGTACACATCAAACAGAGAAGTGAGTAGATATACAATACCCCATGTTAAAACGACTTCACTAGTGAGTAAAATACATGGTGTGCATCCCTCATTCTAGGAAGGTGAACAGAGAGTTATTAGAAGTGTACACTATGTACCATCATTAATGAATACAAGCAAAAGTGGTTAAGGAATATAAAGAAAAGggcctctctcttttctctctctccgtattCAGCATGTCCACACGGATCCACAGCTCAGTGCCACAACCCGCTATGTTTctgagaaacacacactcacacgttagcatgcatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1148880 lncRNA upstream 150 68443649 ~ 68445074 (+) False G1009990
TU1148867 lncRNA upstream 12305 68432602 ~ 68432919 (+) True G1009983
TU1148854 lncRNA upstream 25457 68419563 ~ 68419767 (+) True G1009973
TU1148851 lncRNA upstream 28407 68416606 ~ 68416817 (+) True G1009970
TU1148814 lncRNA upstream 82924 68362021 ~ 68362300 (+) True G1009936
TU1148881 lncRNA downstream 3957 68451231 ~ 68451543 (+) True G1009991
TU1148890 lncRNA downstream 13221 68460495 ~ 68460703 (+) True G1009999
TU1148891 lncRNA downstream 14593 68461867 ~ 68462075 (+) True G1010000
TU1148892 lncRNA downstream 14892 68462166 ~ 68462365 (+) True G1010001
TU1148893 lncRNA downstream 16253 68463527 ~ 68463794 (+) True G1010002
XM_036936189.1 mRNA upstream 32011 68364480 ~ 68413213 (+) False LOC110535098
XM_036936190.1 mRNA upstream 32011 68364480 ~ 68413213 (+) True LOC110535098
XM_021622011.2 mRNA upstream 84020 68287058 ~ 68361204 (+) False LOC110536289
XM_021622014.2 mRNA downstream 137353 68584627 ~ 68587134 (+) False LOC110536291
XM_021622015.2 mRNA downstream 143435 68590709 ~ 68611500 (+) True LOC110536292
XR_005034824.1 mRNA downstream 214476 68661750 ~ 68661802 (+) True LOC118937485
XM_036936202.1 mRNA downstream 239947 68687221 ~ 68847333 (+) False LOC110535101
XM_036936201.1 mRNA downstream 239948 68687222 ~ 68847333 (+) False LOC110535101
TU1146747 other upstream 1562973 66881799 ~ 66882251 (+) True G1008017
TU1146661 other upstream 1647007 66793890 ~ 66798217 (+) True LOC110536267
TU1146218 other upstream 2032289 66412574 ~ 66412935 (+) True G1007556
TU1145712 other upstream 2427651 66009581 ~ 66017573 (+) True G1007088
TU1145628 other upstream 2545856 65898748 ~ 65899368 (+) True G1007008
TU1149042 other downstream 137394 68584668 ~ 68587042 (+) True LOC110536291
TU1149261 other downstream 352926 68800200 ~ 68825000 (+) False LOC110535101
TU1150028 other downstream 951444 69398718 ~ 69400234 (+) True LOC110536300
TU1150364 other downstream 1186227 69633501 ~ 69633876 (+) True G1011336
TU1150422 other downstream 1258160 69705434 ~ 69711333 (+) False sb:cb288

Expression Profile