RNA id: TU1150868


Basic Information

Item Value
RNA id TU1150868
length 2827
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1011719
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69935946 ~ 69938863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGTTTAATAGTtacatgtacagggttgtaggtggGTTTGCAGGTGggattgcagggtacagtgaaagtCTTTCAGCATTAACATGCAGGACttttgaaataaaataatgaaatagaAATAACAACAGTATAAATAGCACTATATACACATCATAATAAGTGTAGCAGTGAGGAATAaataaatgtccattggggtggaggtagagtaaagactgttgaggggctggggtggaatgaccatagggggagcagcagcatgaccattgAGCACAATAAAAACAATCAACATTttaatacaatttaaaatataCATATTAACAACAGCAACAGTGATAAAATGCCATTGGTGAGGGGGCAGAATAAAAGTATGTTCGGGTGGGGGGCtggtagctgactagtggtggctattcagcagcctgatggtctgaggGCAGAAACTATTGGCCAGTCTTTCAGTTTTTGCCATGATGCTTCTGTACTGCCATGTCTGAGTGATTGACGCGGGGAGAACAGGTCATGGTTTGGTGTCTGGAgtccctgatgatcttcttgacttcctgcgacacctggtgttgtaggtgtcctgtagggcagTGTGCACCCCATGGTGCATTTGGCTGCATGTacaccctctgaagagccttgcGGTCTGCGGCGgtggagttgccgtaccaggctgtgatgcagcccaacaatatgctctcgatggtgcttctgtagaacactgtgagggcCCTCGAGGACAGGCTGAATTTCctcagcatcctgaggttgaagagttaCTGTAGTGCCTTCTTCTCTACTTTGTCCATGTGGTTAGATCATTTCAGCTTCTCTGAGATGTGAATCCCAAGGAATTTTAAGTTATTGACTGTCTCCACGGCAGCCCCATTGATGAGGACTgcctggttcctcctgaagtccaaAATCAGCTTCTTTCTTTCGCTAAcgcagagggaggggttgttaATCTGGCACCATGCCGTCAGCATGCCTATCTCCTCCCTGTAGGGGTCGTTGttgttgatcaggcctactactgtcatGTCGTCAGTacacttgatgatggagttggaactgtcTGAGGCCAAGCAGTCGTTggtatacaggaggggactgaggacgcacccttgggcccctgtgttgagggtcagtgtcgAGGAGGTAATGTTGCCCACCTtctccacctgggggcggccagtcaggaactccaggacccagttgcatagggaggagtAGTGCTCAATTTAAGCAGTGCTTACTTGGTATGTGTTCGACTGGAGCCATAAAGGAGCCATTAAACATCACGTAAAAAAAATTGAAAGCAAACGGAGAAAAATGACATATGCTGTATTCCATCAGATGGAGTTGTTCTTGAGATATAATCACACAACATTGAACCTCTAAACTACTGTAACTTGCGAAGAACCCTTTGCTTTATAAAAGTAATGTCACAGGTATACTGCACCAGTAATACGGCAGAAAACAGCAGGTGCATTGCCTTTGAGTTCTTAGATACCTCAATCTATTAATGTGATTGGCTAGGTATTAAATTCAGGCTAGGTATCAAATTCAGGCTGTCTCCACATTTCAGAACCACAATAGTCTACTGAGCTAAAGCCTGGGCAATAATGTTGGGAGCTAAAACGAGTCTTCAGGTGTCAGGCAAGGTTATAAAACATGTGAGCATGTTTTATTAAACCACCTGTGCAGTGCGATACACACATCGGTTGGCAggaggtatataaaacacagagtGTCAGAGTGCAATACATCAAAAACTAACACCTTTCAGCCAAGAACAAAAATGTTGTGGTGAGAGGGTGATGCACGTCACTCACATTGCCTTGGTCCATGTACAATAATAGAAAACAAACATGTTATaaacaaaaaaagaaatacaACAAGTGACAAACCCAAACAGACTCCTCTGtgcgacaacacacacacacaacacacacatgccCATAGAACATCACTTTGTATTTTCTCAACACCATGGTTCTTATAGTTCCACTCTTGTCTTTACACATTCAAATCAACTGCCTGCTCCTACACTCTCCAACTGTCTGGAGCTCTTCCCTCTTGCTGACTTTGGAACTAGAACTCACCTCTGAGGAagtaaaagacagaaagagagggaaagagagaaggtgagaaaatgagtgtcagagagagagagagatcaaagaaACAAcagaagaaagacagaaagagaggaaaagagagaaggtgagaaaatgagtatcagagagagagagagagagagatcaaagagACAAcagaagaaagacagaaagagaggaaaagagagaaggtgagaaaatgagtatcagagagagagagagagagagagatcaaagagACAAcagaagaaagacagaaagagagagcgtgaCAGAAAGGACAGAGAAGGCTAGTGAGAGAAAatgggggagagaaaaagagtgagacagtcagagacaaagagagagtgacgGGGTGAAGTGTGGGTAGCTGGAGACtgtctgtggtgtgtggtgtAGACTCAAGTATGCAGCTCTGTGTTGGTTGCTAGGTaacagcagctctcacagtccTCTCCAGGTGGTAGCTAGGTTACACCATTTCACAGTCATCTGTGGGCGGTTTCTAGGATACACCAGACAATAGCGTTCACTTTCTGTTGGTTGCTAGGTTACACCAGCTCACAGTGCCCACGCCGTGCTTGTTGTTAGGTTACACCAGTTCGTCCAGTAGTGTTCCTATGCTGTTGCGCTGTTCTGGGGGTCCTGCAATGGTTTTGTTGCACATGGGGCACACACAGCGCACCTCCAGCCATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1150839 lncRNA downstream 24178 69910368 ~ 69911768 (-) True G1011700
TU1150793 lncRNA downstream 42988 69800076 ~ 69892958 (-) True G1011657
TU1150759 lncRNA downstream 220276 69715451 ~ 69715670 (-) True G1011626
TU1150753 lncRNA downstream 224573 69709686 ~ 69711373 (-) True G1011623
TU1150745 lncRNA downstream 230984 69704297 ~ 69704962 (-) True G1011619
TU1150869 lncRNA upstream 1988 69940851 ~ 69942377 (-) True G1011720
TU1150870 lncRNA upstream 4136 69942999 ~ 69943236 (-) True G1011721
TU1150886 lncRNA upstream 16773 69955636 ~ 69955925 (-) True G1011730
TU1150898 lncRNA upstream 30989 69969852 ~ 69971225 (-) True G1011738
TU1150899 lncRNA upstream 33392 69972255 ~ 69972477 (-) True G1011739
XM_021622054.2 mRNA downstream 37780 69895616 ~ 69898166 (-) True LOC110536320
XM_036936235.1 mRNA downstream 43864 69847223 ~ 69892082 (-) True LOC110536318
XM_036936234.1 mRNA downstream 43865 69847223 ~ 69892081 (-) False LOC110536318
XM_021619968.2 mRNA downstream 112661 69821531 ~ 69823285 (-) True LOC110535106
XR_005034731.1 mRNA downstream 130001 69791411 ~ 69805945 (-) True LOC110536317
XM_021622063.2 mRNA upstream 36025 69974888 ~ 69983058 (-) True LOC110536328
XR_005034807.1 mRNA upstream 57465 69996328 ~ 69999946 (-) True LOC110536645
XM_036936243.1 mRNA upstream 87345 70026208 ~ 70030420 (-) True LOC110536332
XM_021622073.2 mRNA upstream 161259 70100122 ~ 70113042 (-) False smyd1b
XM_021622074.2 mRNA upstream 162020 70100883 ~ 70113041 (-) True smyd1b
TU1149998 other downstream 629518 69305336 ~ 69306428 (-) True G1011014
TU1149899 other downstream 816460 69116507 ~ 69119486 (-) True G1010922
TU1149378 other downstream 1247984 68687257 ~ 68687962 (-) False G1010443
TU1148585 other downstream 1964618 67971071 ~ 67971328 (-) True G1009720
TU1146168 other downstream 3562997 66372642 ~ 66372949 (-) True G1007506
TU1152021 other upstream 945613 70884476 ~ 70890991 (-) True G1012814
TU1152952 other upstream 1558445 71497308 ~ 71515434 (-) True G1013669
TU1153293 other upstream 2057218 71996081 ~ 71996688 (-) True G1013960
TU1153754 other upstream 2420422 72359285 ~ 72359505 (-) True G1014411
TU1154017 other upstream 2507791 72446654 ~ 72449340 (-) True G1014639

Expression Profile