RNA id: TU1153778


Basic Information

Item Value
RNA id TU1153778
length 230
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1014435
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 72379573 ~ 72379802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCATGATGTACGAGTGTCTGGATagacggaacacacacacacactcctcatgaTGTACGAGTGTCTGGATAGACGGAAAACACACTCCTCATGATGTACGAGTGTCTGGATagacggaacacacacacacactcctcatgaTGTACGAGTGTCTGGATAGACGGAACACACACTCCTCATGATGTACGAGTGTCTGGATagacggaacacacacacaaactcctcaTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1153775 lncRNA downstream 2293 72376688 ~ 72377280 (-) True G1014432
TU1153774 lncRNA downstream 3015 72376182 ~ 72376558 (-) True G1014431
TU1153749 lncRNA downstream 32457 72346811 ~ 72347116 (-) True G1014406
TU1153733 lncRNA downstream 43582 72335787 ~ 72335991 (-) True G1014390
TU1153706 lncRNA downstream 68723 72310631 ~ 72310850 (-) True G1014363
TU1153839 lncRNA upstream 45604 72425406 ~ 72427453 (-) True G1014488
TU1153851 lncRNA upstream 57442 72437244 ~ 72437667 (-) True G1014500
TU1153862 lncRNA upstream 60756 72440558 ~ 72441878 (-) True G1014509
TU1153863 lncRNA upstream 65120 72444922 ~ 72445397 (-) True G1014510
TU1154054 lncRNA upstream 165614 72545416 ~ 72546024 (-) True G1014674
XM_021622102.2 mRNA downstream 532880 71838302 ~ 71846693 (-) True LOC110536354
XM_036936254.1 mRNA downstream 746510 71629002 ~ 71633063 (-) True LOC110536352
XM_021622100.2 mRNA downstream 746511 71628579 ~ 71633062 (-) False LOC110536352
XR_002475416.2 mRNA downstream 752077 71620800 ~ 71627496 (-) True LOC110536351
XM_021622097.2 mRNA downstream 780410 71529971 ~ 71599163 (-) True LOC100135988
XM_036936258.1 mRNA upstream 62167 72441969 ~ 72442889 (-) True LOC118937382
XM_036936261.1 mRNA upstream 73118 72452920 ~ 72584060 (-) False LOC110536359
XM_036936262.1 mRNA upstream 73118 72452920 ~ 72584060 (-) False LOC110536359
XM_036936260.1 mRNA upstream 73118 72452920 ~ 72584061 (-) True LOC110536359
XM_021622107.2 mRNA upstream 217985 72597787 ~ 72647320 (-) True LOC110536361
TU1153754 other downstream 20068 72359285 ~ 72359505 (-) True G1014411
TU1153293 other downstream 382885 71996081 ~ 71996688 (-) True G1013960
TU1152952 other downstream 864139 71497308 ~ 71515434 (-) True G1013669
TU1152021 other downstream 1488582 70884476 ~ 70890991 (-) True G1012814
TU1149998 other downstream 3073145 69305336 ~ 69306428 (-) True G1011014
TU1154017 other upstream 66852 72446654 ~ 72449340 (-) True G1014639
TU1156448 other upstream 1923848 74303650 ~ 74306809 (-) True rnft2
TU1157097 other upstream 2510597 74890399 ~ 74891140 (-) True G1017417
TU1157964 other upstream 2988646 75368448 ~ 75368826 (-) True G1018159
TU1158883 other upstream 3863914 76243716 ~ 76246887 (-) True ckap2l

Expression Profile