RNA id: TU1159223


Basic Information

Item Value
RNA id TU1159223
length 259
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1019176
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 76807267 ~ 76807525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACACACCCCTTCCCATCTTTGATTAATGTTGTATTTATCTATAGAGCAATAGAATTCTGTGTCCTGTCTCCACATAACTAGTTTTTGTCATCTGCTAACCAAGCATAATAAAGCTCATTTGGAATATAGAACTATGTCACTACCGTAGAATAACAGAGAATAGCATATCTAATTACATAGCGTCATCAATAAGAACAGGTGCTGACTTGACCAGCTACAGGAACTCTGAGAGGTGGGAAAATGGGGAATAAACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1159219 lncRNA downstream 1589 76805453 ~ 76805678 (-) True G1019172
TU1159218 lncRNA downstream 2023 76805023 ~ 76805244 (-) True G1019171
TU1159210 lncRNA downstream 18541 76788514 ~ 76788726 (-) True G1019165
TU1159209 lncRNA downstream 19383 76787507 ~ 76787884 (-) True G1019164
TU1159205 lncRNA downstream 27609 76779422 ~ 76779658 (-) True G1019161
TU1159235 lncRNA upstream 10236 76817761 ~ 76818050 (-) True G1019188
TU1159422 lncRNA upstream 10930 76818455 ~ 76819728 (-) True LOC110536408
TU1159509 lncRNA upstream 141507 76949032 ~ 76950167 (-) True G1019408
TU1159528 lncRNA upstream 159511 76967036 ~ 76970016 (-) False G1019418
TU1159529 lncRNA upstream 159511 76967036 ~ 76969815 (-) True G1019418
XM_036936391.1 mRNA downstream 4342 76670921 ~ 76802925 (-) False LOC110535119
XM_036936392.1 mRNA downstream 4342 76670921 ~ 76802925 (-) False LOC110535119
XM_036936393.1 mRNA downstream 4342 76670921 ~ 76802925 (-) False LOC110535119
XM_036936382.1 mRNA downstream 468418 76267566 ~ 76338849 (-) True LOC110536403
XM_036936383.1 mRNA downstream 468419 76267566 ~ 76338848 (-) False LOC110536403
XM_021622171.2 mRNA upstream 10925 76818450 ~ 76848904 (-) False LOC110536408
XM_021622172.2 mRNA upstream 10925 76818450 ~ 76848904 (-) False LOC110536408
XR_005034745.1 mRNA upstream 134855 76942380 ~ 76965599 (-) True LOC118937405
XM_036936406.1 mRNA upstream 253318 77060843 ~ 77079601 (-) False hmgcra
XM_036936405.1 mRNA upstream 254875 77062400 ~ 77081765 (-) True hmgcra
TU1159078 other downstream 261526 76545108 ~ 76545741 (-) True G1019056
TU1158883 other downstream 560380 76243716 ~ 76246887 (-) True ckap2l
TU1157964 other downstream 1438441 75368448 ~ 75368826 (-) True G1018159
TU1157097 other downstream 1916127 74890399 ~ 74891140 (-) True G1017417
TU1156448 other downstream 2500458 74303650 ~ 74306809 (-) True rnft2
TU1159523 other upstream 147841 76955366 ~ 76956817 (-) True G1019413
TU1160211 other upstream 768346 77575871 ~ 77576664 (-) True G1019926
TU1160563 other upstream 812558 77620083 ~ 77627566 (-) True ccdc125
TU1161240 other upstream 1677636 78485161 ~ 78487183 (-) True LOC110536450
TU1161585 other upstream 1746103 78553628 ~ 78566847 (-) True G1021084

Expression Profile