RNA id: TU1160567


Basic Information

Item Value
RNA id TU1160567
length 1512
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1020232
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 77626634 ~ 77664521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTTGTATTCTTTATTATGTTGTTCCACCATCATTCCTTCCTTGTACAGTATAAAGCTTTAGCCATACAAAAACGACCACTGTCTACtgataaaacctgtgagtatttCATGGAAATACTAGCGGTATGAGGACAAAATTAAACGTTTCATGCATCTTTTCTTAAATAAAATGGAAATATGAAAcctaaaatgaaaaacaaaataaaaaaataaacttctGGCAAAAACACAATTCCTGCATTATGGCCTGTGTTGTTGAAATCTGAATGACATGACTAGGTTTATGGCTACCAATGTCCACAAGAAATGATGAATTTAAAAGATAATACaattcaaaaataaaaaataaatgtaaaacaaaaaacacatttaaccaaaaggcatgttttttttgttatgtAGATAAACCATTGCAATGCAATAAATGCAAAATAAATTGTAAATCGGTTTTAAATCAATCTATGCCACAAGAAAATGCAGCATGCATCTAACTAACTAACACATTCAATTTTGCCCATCCTTAAGACTCTAAAATGACAAAACATTTCCCTTAGGAGAGTAGAGATATAGTGACGCATGCATTTGGGCTTGAATACTGCCCAAATCTTGTGATGACATGGTGTTTCATGACATCTAGCTTGTCCATGAACAGCTCTTGCAACACAAGTCAGTATCCAAACATGCTTACTGCCCTAGCTTTCATCCTAAATGAAGGTGTGGTTAACCATACAGTCCAAGCAGGGAATAAACACAGCCAACGGGTGCATCTCAACTGACACCAGCTACCACATATAGTGCACTATCGTCGACCAGTGTGCTAGGCCCtgatcaaaattagtgcactatatagcgaacAGGCTACCATTTGAGACCTAGATATTTATTATCATTCCACTGGGCTACTCAGTGAGGTAACCACGCTTGTCCAGGTCTTAGACTGTAAACATGTCTACAATAGAGAGTGTATTGTTTACCAATTTTATGTCATCAATGTTGTCAACTATGCTAGATGAATTTCGTTTTCAGACCCGGGGCATATTTTTGTTCCAGTCCAAGACTATCACACCCATTTCAACAACTCAATGATTGGTTGATCAATTCAGAATCGGGTGTGATACATGTTGTGCTCGAACCAAAACCAGGACCAGGACTTAAAGCCTCAGTACTATCCTAGTATGTGTGTGATTGCTATAAGTTAAAggcatatagatttttttttttttttttttttcaacaaacATAAAGAGTCCATTGGTATGTTTTTTTTCTAGTATGAAGAAGATTCCAGCCATGCACTGTTTTGGTTTCTAGGGTTTGTGTCCATGCTAGTTGTTGTCCTTCACCCACTGCTCGATCCACTGGACTACCTGCTCCAGGTTACGCTCCAGGTCCTCAGGCTCGTTGCTGGGCAACTGGTGGACAATCTCCTCCTTGTAGGCCTCCATGGCCTCCTCGTAGATGGTCTGGAAGATCTCACACTGGACATTGTCCTGCAATTTCTTCCCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1160562 lncRNA downstream 37404 77620083 ~ 77625543 (-) False ccdc125
TU1160223 lncRNA downstream 63113 77598484 ~ 77599834 (-) True G1019938
TU1160224 lncRNA downstream 64757 77595666 ~ 77598190 (-) True G1019939
TU1160210 lncRNA downstream 86283 77575871 ~ 77576664 (-) False G1019926
TU1160208 lncRNA downstream 89474 77572558 ~ 77573473 (-) True G1019925
TU1160614 lncRNA upstream 29736 77694257 ~ 77694488 (-) True G1020271
TU1160616 lncRNA upstream 32380 77696901 ~ 77697948 (-) True G1020273
TU1160635 lncRNA upstream 73470 77737991 ~ 77739799 (-) True G1020291
TU1160640 lncRNA upstream 83905 77748426 ~ 77748732 (-) True G1020296
TU1160641 lncRNA upstream 84856 77749377 ~ 77749658 (-) True G1020297
XM_021622194.2 mRNA downstream 3084 77645962 ~ 77659863 (-) True rad17
XM_036936427.1 mRNA downstream 18143 77619098 ~ 77644804 (-) False ccdc125
XM_036936426.1 mRNA downstream 19477 77619098 ~ 77643470 (-) False ccdc125
XM_036936425.1 mRNA downstream 44688 77605168 ~ 77618259 (-) True fam151b
XM_036936419.1 mRNA downstream 131063 77529680 ~ 77531884 (-) True LOC118937407
XM_036936439.1 mRNA upstream 36412 77700933 ~ 77725335 (-) False erap1b
XM_036936438.1 mRNA upstream 36412 77700933 ~ 77725921 (-) True erap1b
XM_036936443.1 mRNA upstream 95408 77759929 ~ 77778022 (-) True LOC110535124
XR_005034746.1 mRNA upstream 113540 77778061 ~ 77821554 (-) False LOC118936501
XR_005034747.1 mRNA upstream 113540 77778061 ~ 77821554 (-) False LOC118936501
TU1160563 other downstream 35381 77620083 ~ 77627566 (-) True ccdc125
TU1160211 other downstream 86283 77575871 ~ 77576664 (-) True G1019926
TU1159523 other downstream 706130 76955366 ~ 76956817 (-) True G1019413
TU1159078 other downstream 1117206 76545108 ~ 76545741 (-) True G1019056
TU1158883 other downstream 1416060 76243716 ~ 76246887 (-) True ckap2l
TU1161240 other upstream 820640 78485161 ~ 78487183 (-) True LOC110536450
TU1161585 other upstream 889107 78553628 ~ 78566847 (-) True G1021084
TU1161639 other upstream 969100 78633621 ~ 78634401 (-) True G1021129
TU1162332 other upstream 1757989 79422510 ~ 79423479 (-) True G1021664
TU1162558 other upstream 2040698 79705219 ~ 79705722 (-) True G1021853

Expression Profile