RNA id: TU1161585


Basic Information

Item Value
RNA id TU1161585
length 1077
RNA type TUCP
GC content 0.49
exon number 3
gene id G1021084
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 78553628 ~ 78566847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaatatatttttttcatttaattGTCAGGTTGTAAAATTCCAAATATTCTGAGAAAAGCTTAAGAAAATAGTTTTACAATCCTCCTCAATTGTAAACTGGTCTTTGACATGTACATGGACCTAAATAAAGTATACCATATTGGCCCATCCTCTTGATCCAGAACGGCTCACTTTTTGCAGGTGCCTTTGGCGGTGCTCTCCTTTGCAGTGCTCTTCAACACTGCTGTCTCCTTTGCAGTGCTCTCCAACACAGTGGCAGTGTTCTCCTTTGCAGTGCTCTTCAACACTGCTGTCTCCTTTGCAGTGCTCTTCAACACAGTGGCAGTGTTCTTCTTTGCAGCGCTCTTCACCACTGGTGTCTCCTTTGCAGTGCTCTTCACCACTGGTGTCTCCTTTGCAGTGGTAGTGTCCTCCTTTGCAGTGTTCTTCGCCGCAGTGCTCTCCTTTGCAGTGCTCTTCGCCGCAGTGCTCTCCTTTGCAGTGCTCTTCACCACTGGTGTCTCCTTTGCAGTGCTCTCCTTTGCAGTACTCTTCGCCGCAGTGCTCTCCTTAGCAGTGCTCTTTGCCGCAGTGCTCTCCTTTGTAGTGCCCTTCGCTACAATGCTCTCCTTCGTAGTGCTCTCCACCACAGTGGCAGTGCTCTCCTTCATAGTGCTCTCCACCACAGTGGCAGTGCTCTCCTTTGCAGTGCTCTTCACCGCTGGTGTCTCCTTTGCAGTACCCTTCGCCACAGTACTCTTCACCGCTGGTGTCTCCTTTGCAGTACTCTTCGCCGCAGTGCTCACCTTTGCAGTGCTGTTTTGCGCTCTTTTGAGAATGTTTGCCTTTGTCTTCAACTCGTCAGCAAGTGTATTCTGGTTCATGTTCTTCAGGATATTAATTGTGACGCCCAGAGCCCCATTCTCTTTGTATTTGTTCACCATCAGCTCCACGGTATTCTCCCTGCTTGTGTCGCGATCCAACTCGCTTTTTTTGATAGGCTCATAGCCACGCCTCTGGTGCCTGATCAGGAGCCACTGAAATCTCTTCATCTCCTCACTCGTCACCTCATCCAGAATGTTGACCAACACCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1161596 lncRNA downstream 1062 78547599 ~ 78552566 (-) True G1021095
TU1161576 lncRNA downstream 35369 78518040 ~ 78518259 (-) True G1021075
TU1161256 lncRNA downstream 43098 78510150 ~ 78510530 (-) True G1020813
TU1161235 lncRNA downstream 72997 78480105 ~ 78480631 (-) True G1020796
TU1161228 lncRNA downstream 95144 78457143 ~ 78458484 (-) False G1020790
TU1161606 lncRNA upstream 5351 78572198 ~ 78572586 (-) True G1021104
TU1161562 lncRNA upstream 6984 78573831 ~ 78578346 (-) False G1021063
TU1161560 lncRNA upstream 9293 78576140 ~ 78578346 (-) False G1021063
TU1161561 lncRNA upstream 9293 78576140 ~ 78578346 (-) True G1021063
TU1161609 lncRNA upstream 12009 78578856 ~ 78579996 (-) True G1021107
XM_021622215.2 mRNA downstream 66426 78485116 ~ 78487202 (-) False LOC110536450
XM_036936451.1 mRNA downstream 77308 78468533 ~ 78476320 (-) True LOC110536449
XM_021622213.2 mRNA downstream 120142 78414793 ~ 78433486 (-) True LOC110536447
XR_005034746.1 mRNA downstream 732074 77778061 ~ 77821554 (-) False LOC118936501
XR_005034747.1 mRNA downstream 732074 77778061 ~ 77821554 (-) False LOC118936501
XM_036936460.1 mRNA upstream 207718 78774565 ~ 78797212 (-) False cnot6l
XM_036936458.1 mRNA upstream 209244 78776091 ~ 78797212 (-) False cnot6l
XM_036936459.1 mRNA upstream 214216 78781063 ~ 78797212 (-) True cnot6l
XM_036936467.1 mRNA upstream 628026 79194873 ~ 79224499 (-) True LOC110536655
XM_036936468.1 mRNA upstream 692464 79259311 ~ 79265496 (-) False LOC110535130
TU1161240 other downstream 66445 78485161 ~ 78487183 (-) True LOC110536450
TU1160563 other downstream 926062 77620083 ~ 77627566 (-) True ccdc125
TU1160211 other downstream 976964 77575871 ~ 77576664 (-) True G1019926
TU1159523 other downstream 1596811 76955366 ~ 76956817 (-) True G1019413
TU1159078 other downstream 2007887 76545108 ~ 76545741 (-) True G1019056
TU1161639 other upstream 66774 78633621 ~ 78634401 (-) True G1021129
TU1162332 other upstream 855663 79422510 ~ 79423479 (-) True G1021664
TU1162558 other upstream 1138372 79705219 ~ 79705722 (-) True G1021853
TU1162808 other upstream 1332082 79898929 ~ 79900131 (-) True LOC110535133
TU1163264 other upstream 1588650 80155497 ~ 80159395 (-) False G1022395

Expression Profile