RNA id: TU1161621


Basic Information

Item Value
RNA id TU1161621
length 599
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G1021117
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 78603552 ~ 78604227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacgcaaaaaaGGGACTTTTTCATCTGTGCATTAAAATAagagcttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtggaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaacttacagtgaaatgctgaatacaacaggtgtagtagaacttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttaccgtgaaatgcttatttagtCCTAaatcaacagtgcagttcaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1161617 lncRNA downstream 2367 78600599 ~ 78601185 (-) True G1021114
TU1161616 lncRNA downstream 4732 78598582 ~ 78598820 (-) True G1021113
TU1161565 lncRNA downstream 10896 78591038 ~ 78592656 (-) True G1021065
TU1161614 lncRNA downstream 15113 78588206 ~ 78588439 (-) True G1021111
TU1161612 lncRNA downstream 20407 78582896 ~ 78583145 (-) True G1021109
TU1161626 lncRNA upstream 4872 78609099 ~ 78609372 (-) False G1021120
TU1161628 lncRNA upstream 4872 78609099 ~ 78609458 (-) False G1021120
TU1161627 lncRNA upstream 4903 78609130 ~ 78609372 (-) False G1021120
TU1161630 lncRNA upstream 4903 78609130 ~ 78609458 (-) True G1021120
TU1161632 lncRNA upstream 16178 78620405 ~ 78620743 (-) True G1021122
XM_021622215.2 mRNA downstream 116350 78485116 ~ 78487202 (-) False LOC110536450
XM_036936451.1 mRNA downstream 127232 78468533 ~ 78476320 (-) True LOC110536449
XM_021622213.2 mRNA downstream 170066 78414793 ~ 78433486 (-) True LOC110536447
XR_005034746.1 mRNA downstream 781998 77778061 ~ 77821554 (-) False LOC118936501
XM_036936460.1 mRNA upstream 170338 78774565 ~ 78797212 (-) False cnot6l
XM_036936458.1 mRNA upstream 171864 78776091 ~ 78797212 (-) False cnot6l
XM_036936459.1 mRNA upstream 176836 78781063 ~ 78797212 (-) True cnot6l
XM_036936467.1 mRNA upstream 590646 79194873 ~ 79224499 (-) True LOC110536655
XM_036936468.1 mRNA upstream 655084 79259311 ~ 79265496 (-) False LOC110535130
TU1161585 other downstream 36705 78553628 ~ 78566847 (-) True G1021084
TU1161240 other downstream 116369 78485161 ~ 78487183 (-) True LOC110536450
TU1160563 other downstream 975986 77620083 ~ 77627566 (-) True ccdc125
TU1160211 other downstream 1026888 77575871 ~ 77576664 (-) True G1019926
TU1159523 other downstream 1646735 76955366 ~ 76956817 (-) True G1019413
TU1161639 other upstream 29394 78633621 ~ 78634401 (-) True G1021129
TU1162332 other upstream 818283 79422510 ~ 79423479 (-) True G1021664
TU1162558 other upstream 1100992 79705219 ~ 79705722 (-) True G1021853
TU1162808 other upstream 1294702 79898929 ~ 79900131 (-) True LOC110535133
TU1163264 other upstream 1551270 80155497 ~ 80159395 (-) False G1022395

Expression Profile