RNA id: TU1162422


Basic Information

Item Value
RNA id TU1162422
length 1144
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G1021733
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 79559378 ~ 79584108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAATGTATGTTTGGAGTGTCCACAATGTTCCATCCGCTCCTACCTGAAGACTGTTAATGTATGTTATATTCCATCCCAGTTTCCATCTCCTTAGGGGGCTCCAAATGTGGAAAGTACCAGATAAAATGAACTGCTATTGGTGGATATGCCTGGACTGAAGGCAAGGAAGCAATAGTTGAAGACTAGCTACCTGTCCAGGTGGTTTGTtatacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactttgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggaaattccactgtgagactcttagagttctacagggtaattccactgtgagactctaagatagagttctacagggtaattccactgtgagacaccgagatagagttctacagggtaattccactttgagactcttagatatagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagagttCTACAgagtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactttgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttatacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttatacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattacactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagacaccgagatagagttctacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1162397 lncRNA downstream 30502 79540470 ~ 79541744 (-) True G1021723
TU1162314 lncRNA downstream 156654 79387657 ~ 79415592 (-) True G1021647
TU1162317 lncRNA downstream 179907 79391541 ~ 79392339 (-) True G1021650
TU1162315 lncRNA downstream 183631 79388009 ~ 79388615 (-) True G1021648
TU1162291 lncRNA downstream 220770 79350788 ~ 79351476 (-) True G1021631
TU1162439 lncRNA upstream 3101 79587209 ~ 79587672 (-) True G1021742
TU1162445 lncRNA upstream 10693 79594801 ~ 79595066 (-) True G1021748
TU1162446 lncRNA upstream 11043 79595151 ~ 79595368 (-) True G1021749
TU1162448 lncRNA upstream 12691 79596799 ~ 79597145 (-) True G1021751
TU1162458 lncRNA upstream 27693 79611801 ~ 79612074 (-) True G1021760
XM_036936468.1 mRNA downstream 306750 79259311 ~ 79265496 (-) False LOC110535130
XM_036936469.1 mRNA downstream 306750 79259311 ~ 79265496 (-) True LOC110535130
XM_036936467.1 mRNA downstream 347747 79194873 ~ 79224499 (-) True LOC110536655
XM_036936458.1 mRNA downstream 775034 78776091 ~ 78797212 (-) False cnot6l
XM_036936476.1 mRNA upstream 296910 79881018 ~ 79984912 (-) False LOC110535133
XM_036936474.1 mRNA upstream 296910 79881018 ~ 79984913 (-) False LOC110535133
XM_036936475.1 mRNA upstream 296910 79881018 ~ 79984913 (-) False LOC110535133
XM_036936477.1 mRNA upstream 421275 80005383 ~ 80007638 (-) False LOC110535132
XR_005034754.1 mRNA upstream 421275 80005383 ~ 80007638 (-) False LOC110535132
TU1162332 other downstream 148767 79422510 ~ 79423479 (-) True G1021664
TU1161639 other downstream 937845 78633621 ~ 78634401 (-) True G1021129
TU1161585 other downstream 1005399 78553628 ~ 78566847 (-) True G1021084
TU1161240 other downstream 1085063 78485161 ~ 78487183 (-) True LOC110536450
TU1160563 other downstream 1944680 77620083 ~ 77627566 (-) True ccdc125
TU1162558 other upstream 121111 79705219 ~ 79705722 (-) True G1021853
TU1162808 other upstream 314821 79898929 ~ 79900131 (-) True LOC110535133
TU1163264 other upstream 571389 80155497 ~ 80159395 (-) False G1022395
TU1163266 other upstream 571389 80155497 ~ 80159395 (-) False G1022395
TU1163268 other upstream 571389 80155497 ~ 80159395 (-) False G1022395

Expression Profile