RNA id: TU1162558


Basic Information

Item Value
RNA id TU1162558
length 504
RNA type TUCP
GC content 0.62
exon number 1
gene id G1021853
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 79705219 ~ 79705722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagatctgggagagtctggtcgaccggcagatctgggagagtctggtcgaccggcagatctgggagagtctggtcgaccggcagatctggctgctccatgctgactggctgctcaatgctgactggcagctctggcggctccttgcagactggcagctccttgcagactggcagctccttgcagactggcagctccttgcagactggcagctccttgcagactggcagctctggctgcttcatgtagactgacagctctggctgctccttgcaaactgacagctcgggctgcttcatgcagacggacagctcaggctgctccatgcagactgacagctcaggctgctccatgcagactgacagctccttgcaggctggcagctccttgcaggctggcagctccttgcaggctggcagctccttgcaggctggcagctccttgcaggctggcagctccttgcaggctggcagctctggcggcatcctgcagacaggcagctctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1162548 lncRNA downstream 11969 79693021 ~ 79693250 (-) True G1021843
TU1162545 lncRNA downstream 13938 79691056 ~ 79691281 (-) True G1021840
TU1162494 lncRNA downstream 59213 79645775 ~ 79646006 (-) True G1021795
TU1162485 lncRNA downstream 65729 79638814 ~ 79639490 (-) True G1021786
TU1162483 lncRNA downstream 67443 79637557 ~ 79637776 (-) True G1021784
TU1162568 lncRNA upstream 11900 79717622 ~ 79717885 (-) True G1021861
TU1162579 lncRNA upstream 16996 79722718 ~ 79722921 (-) True G1021871
TU1162589 lncRNA upstream 29350 79735072 ~ 79735395 (-) True G1021879
TU1162590 lncRNA upstream 30383 79736105 ~ 79736360 (-) True G1021880
TU1162594 lncRNA upstream 32183 79737905 ~ 79738138 (-) True G1021884
XM_036936468.1 mRNA downstream 439723 79259311 ~ 79265496 (-) False LOC110535130
XM_036936469.1 mRNA downstream 439723 79259311 ~ 79265496 (-) True LOC110535130
XM_036936467.1 mRNA downstream 480720 79194873 ~ 79224499 (-) True LOC110536655
XM_036936458.1 mRNA downstream 908007 78776091 ~ 78797212 (-) False cnot6l
XM_036936476.1 mRNA upstream 175296 79881018 ~ 79984912 (-) False LOC110535133
XM_036936474.1 mRNA upstream 175296 79881018 ~ 79984913 (-) False LOC110535133
XM_036936475.1 mRNA upstream 175296 79881018 ~ 79984913 (-) False LOC110535133
XM_036936477.1 mRNA upstream 299661 80005383 ~ 80007638 (-) False LOC110535132
XR_005034754.1 mRNA upstream 299661 80005383 ~ 80007638 (-) False LOC110535132
TU1162332 other downstream 281740 79422510 ~ 79423479 (-) True G1021664
TU1161639 other downstream 1070818 78633621 ~ 78634401 (-) True G1021129
TU1161585 other downstream 1138372 78553628 ~ 78566847 (-) True G1021084
TU1161240 other downstream 1218036 78485161 ~ 78487183 (-) True LOC110536450
TU1160563 other downstream 2077653 77620083 ~ 77627566 (-) True ccdc125
TU1162808 other upstream 193207 79898929 ~ 79900131 (-) True LOC110535133
TU1163264 other upstream 449775 80155497 ~ 80159395 (-) False G1022395
TU1163266 other upstream 449775 80155497 ~ 80159395 (-) False G1022395
TU1163268 other upstream 449775 80155497 ~ 80159395 (-) False G1022395
TU1163269 other upstream 449775 80155497 ~ 80159395 (-) False G1022395

Expression Profile