RNA id: TU1163269


Basic Information

Item Value
RNA id TU1163269
length 3390
RNA type TUCP
GC content 0.44
exon number 4
gene id G1022395
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80148560 ~ 80159395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAAGCATTGACAGGTATGAATGGCTTGAGAATCCgaccaaaataaaaataaaacagccACAACAGCAATCAAATAAATGCATTTATTTGAGTCATTGTCTGTCAGAAATAAACCAGTGCTTGTGAGTAATCACAGATCGACAGGTTACTGAGTCGATCACAGATCGACAGGTTAATGAGTCGATCACAGATCGACAGGTTAATGAGTCAATCAAAGATCACAGGTTAATGAGTTGATCACAGATCACAGATGAACAGGCTTAGTGGATCACAGACATTATATGGATGGAAGGATGAGGTGAGGTCACTATGGTGTTGCTATGGAGGTAGATATTGTAGACACAGACTGAACTTGAGCaaaaaatttttttaaattcaccAGTTCCTCTTGTGAAATGAATACAATGAAAATAATATCTTAAACCTTGACCAGCTCTACACTCTCAGCTAGCAGCTTGGCAGCCTGTCGGAGAAAACAAAACATGACATCAGTTATTACATTTGTGTTGCCTTAAATCTACATAATAGGCTATTCCCCACTTTCAAAGTGAAAGGAAacgacagcacacacacacacacgcacactcaatTCGGTCTTACTTCATTTCTACAAATTGTCTTCGTCCTAAAGTACCCCTTTCACCAGGCAATTTGACGACacagatgtaaaaaaaataaacgaTGAAACATTTCCTCAGTGCGTAGTGGTGTCGCTTACCTCGTCAGTGAAGCATGCTTCTTTGTCCTCAGCGGTGCAGCACTTCTCCCTCGTGATGCTGTGGTTAGCAGAGAGGGTCTTCAGATGATCCTCGGTGATGCTGGTCTTATGTCTGACCACATCATACAGCAACCTGAGgacggggacacacacacacacacacacacacacacacacacacacacacgtgtaaacaGAAGTTTGTAAACCTAGCGAGTTAAGAGTATATGTAGGTGTGAATTGGGGCCCACGTGTTTATTCACAGTACGTTCTTAGCATATCTCACTCACTTCTTCCCGGATAGCAGGAGGTCCTTGCTGTTCTTGGTGCAGAGCTCGGGGCCCATGTGGAAGTCGTTGGCATCCAGCTCCGGAGGCGTGAACTCTGCGTCAGGCTGGATGGCCAGGATACAGGGTCTCCTCATGGAGTAGGACTGGTTGCAGCAGCGGGCGATGCGGGGGTTAATGCTGGAGTAGTCGTCGTCGTTACACGTGGTGTCGAGCACGTTGGTCGACTTGGAAAGAGGACAAAGGAAGGGAGAGCTTTTTATGTTTTAAATTTAACCTCTATTTAAAATGTAGACTCAGCGATATATACatgcctgtgtatgtgtgagtaTCATACCTCTGTTTttgtatgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtgtgagtatcATACCTCTGTTTTTGTATGTGCTtgtgtacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgagtaTCATACCTCTGTTTTTGTATGTGCTtgtgtacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagaccttCTCCTCTGCGCAGGGCAAGACTAAGTGGCCTGGCTGGTCCTTGCAGCAGTCATGGaaaacatcagccacagtctCAGACACCATGTGAAGCTGGACGAAGGAGGCCTGAGGCATTATCCTGGTGTAGTACACCATCAtactagaggaggaggagcagggaggaggaggaagaagaggaggagcaggaagaggaagaggaggagcaggaagaggaagaggaggagcaggaagaacaagaggaggagcaggaggaggaggaaaaggaggagcaggtggaagatgaggaggaggaagaagaggaggcgcaagaagaggaagaggaggtgcaggaggaggagcagcaggaagaggaggagtaggaagagaaggagcaggaagaggagcagtattaggaggaagaagaggcgaaagaggaggagcaggaagaggaggaggagcagaaggaTAAGTTCATGTTAATGAACCATGAAATAGCCGTGTATTAAATACGAATTAACCATTCATAAATTATAAATAAGACATTAAAAATAATGATCAATTTACCAATAGCATCTGTCAGGACTAAATGTGACGTTAATGATCGCATACCACAtgaaggacatctactttgacatttcatgacctttgacctctgtGTGAGAGCATGACCCCTCACCTCTTCTCAAAGTTGTAATCTCCCAGGACAGCCTCTGCAGCACACATGTTCTTATAGTATTCAATCTCATCAGCGATCATCTTGTCTATGTTACTGTCGGCCAGCTGCATGGGAACAACAGTGTTAGCCTGCTGAGTTAAAGCCTAGAACCATAACAGTGTTAGCCTGCTGAGTTAAAGCCTAGAACCATAACAGTGTTAGCCTGCTGAGTTAAAGCCTAGAACCATATCAGTGTTAGCCTGCTGATTTAAAGCCTAGAACCATAACAGTGTTAGCCTGCTGAGTTAAAGCCTAGAACCATATCAGTGTTAGCCTGCTGAGTTAAAGCCTAGAACCATAACAGCGTTAGCCTGCTGAGTTAAAGCCTAGAACCATAACAGTGTTAGCCTGCTGAGTTAAAGTCTAGATGATCTAGAACCATTAGCTTAGGGGGGGCGCCAATTCAAGTATTCGGGTTTTAGGGAAGGTTACTCATCATCACAAACTGATAGATAGTGTAGCTAGCTCCTCTGAGAAGATAAGACATGACAAAATAAATTTAGTTGAAATTTAGAGTTGCTGCATCCATGTGGAATATCACATAAAACAATATCAAATCACAATAAGACAAGTGGAAAACTCAGAGAGAACTAggagggggttcttcctactagtaatactagttggagggggttcttcctactagtaatactagttggagggggttcttcctactagtaatatgagttggagggggttcttcctactagtagtatgagttggagggggttcttcctactagtaatactagttggagggggttcttcctactagtaatatgagttggagggggttcttcctactagtaatatgagttggggggggttcttcctactagtaatactagttggagggggttcttcctactagtaatatgagttggagggggttcttcctactagtaatatgagttggagggggttcttcctactagtaatactagttggagggggttcttcctactagtaatactagttggagggggttcttcctactagtaatatgagttggggggggttcttcctactagtaatactagttggagggggttcttcctactagtaatatgagttggagggggttcttcctactagtaatatgagttggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1163285 lncRNA downstream 2521 80150666 ~ 80152976 (-) False G1022400
TU1163286 lncRNA downstream 2521 80150666 ~ 80152976 (-) False G1022400
TU1163287 lncRNA downstream 2521 80150666 ~ 80152976 (-) False G1022400
TU1163288 lncRNA downstream 2521 80150666 ~ 80152976 (-) False G1022400
TU1163289 lncRNA downstream 2521 80150666 ~ 80152976 (-) False G1022400
TU1163329 lncRNA upstream 14897 80174292 ~ 80225563 (-) True G1022431
TU1163363 lncRNA upstream 40557 80199952 ~ 80289564 (-) False G1022449
TU1163378 lncRNA upstream 48797 80208192 ~ 80208461 (-) False G1022461
TU1163380 lncRNA upstream 48797 80208192 ~ 80208461 (-) True G1022461
TU1163414 lncRNA upstream 111706 80271101 ~ 80272682 (-) True G1022493
XM_036936482.1 mRNA downstream 27670 80101077 ~ 80127827 (-) True mthfd2l
XM_036936483.1 mRNA downstream 27677 80101077 ~ 80127820 (-) False mthfd2l
XM_036936484.1 mRNA downstream 27752 80101077 ~ 80127745 (-) False mthfd2l
XM_036936481.1 mRNA downstream 65219 80083983 ~ 80090278 (-) True LOC118937416
XM_036936479.1 mRNA downstream 92469 80045697 ~ 80063028 (-) True areg
XM_036936495.1 mRNA upstream 146167 80305562 ~ 80320402 (-) False LOC110536467
XM_036936494.1 mRNA upstream 146167 80305562 ~ 80320403 (-) True LOC110536467
XM_021622241.2 mRNA upstream 310277 80469672 ~ 80483518 (-) True LOC110536470
XM_036936507.1 mRNA upstream 528431 80687826 ~ 80689436 (-) True LOC118937419
XM_036936508.1 mRNA upstream 561231 80720626 ~ 80772588 (-) True LOC110536477
TU1162808 other downstream 255366 79898929 ~ 79900131 (-) True LOC110535133
TU1162558 other downstream 449775 79705219 ~ 79705722 (-) True G1021853
TU1162332 other downstream 732018 79422510 ~ 79423479 (-) True G1021664
TU1161639 other downstream 1521096 78633621 ~ 78634401 (-) True G1021129
TU1161585 other downstream 1588650 78553628 ~ 78566847 (-) True G1021084
TU1163509 other upstream 312044 80471439 ~ 80473767 (-) True G1022578
TU1163515 other upstream 329159 80488554 ~ 80489044 (-) True G1022584
TU1163536 other upstream 381057 80540452 ~ 80540979 (-) True G1022604
TU1164054 other upstream 734507 80893902 ~ 80898003 (-) True G1023036
TU1164194 other upstream 980589 81139984 ~ 81140579 (-) True G1023156

Expression Profile