RNA id: TU1163359


Basic Information

Item Value
RNA id TU1163359
length 4362
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G1022449
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80199952 ~ 80289564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTAGTTAAATGCAaccattttttttcatttcacaattataataattttattttttttacaaataaaacattACAGTACAGGTATTATGCAAATCAGAAGAGCTTACTTTGTTAAGTCTTAGATGGAGCCCAGGCTTTGTGGGGCCGGTTATCAAACGGTTAAACAACGAAGCGCTATAAAGACAACACCGAGTAGTTTGAGAACCTGCAGGCCAGCTAAGGTAAGGAGCACATTCTACCACAGAATAGACTAGATAGAAAATGAGGACACACTGTCTGCATCCTCGGTAGAGACATCTAGCGCCACCTAGTGGACAAAGTGAGGAATGGAACCGTTTTCCTCATGAGTAGCAGCAGTGCTAGCCTGGAAATCCAAAATGTATTCAGTTTCTTACAATATTGAAAAGTAGCGATTCCGGGCTATAGCAAAAGCGCCACCGTGTGGGGACACCGTGCCAttacatccatccacccaccctgAAGAACAGTGCCTCTACAGAGCGAGACAGTGGCGCCGTCACACCACAAGAAACTGCTTTATTTATTATTGCACAGAATGTTCCCGCAGCGTGTCAAGAGGGCTCGGTTGTCTATTACCAAGCATCGGCATGGTAACAAACTGTCGAACTCTCCCCATTGGCAACCAGCCCAGTCACTGGTTgtttttgattgattgatgatcaGTAGCTAATATTAGTCAAAATGGAGTCTCTCTCGCTACCTTGAGCGGTGCATCCCTAACAGCCTGTCAGGACTGAGAAtgcataaaaaaattaaaataatgaCCAGGTGAGTTCCAAAGGGGATCACTCTATGGAAGGAGATGAATGCCAAAACGCTGGCAGGAACGAGCCTCCATAACAACTCACTGCTTGTCCAAGGACTATGAGCTGCGAGCGGCAGTCATCTCGCCTCGGACATAAAGCCATATCAGATCCTGTCCACCACTCTCCGACAGGTTGACAAAGCGGATGTTTCCGGGTTTTGAGGGATACAGTATTTTCAACCTGGGAACTCCGCTCAGGCATCTTTtttttacgcctgctacgttaggttaccaGTCCACAGAGCTTTTTCTAAGAGCTGATTTGGAATCAGACCTTAGATTTATTAGCCGTGGCTCTGTCCTTAGTGATACTGGTCTCAGGCCTGCGATTAAACTTATTGGCTAGACATGGATGATAAAAGTGTAATATAAGCGTTCCGTTTTCTGCTATAATTAAGTAACCCCAGTCTGGCAGCTCATCAAAGCGGTATAGGGAAACAAAATTACAAAGtgtttttttaaaatctaaaattcaaaataaaaatgGTAATTTAAAAGTCTGATCTATATCGACAACCGACACAGTCTAACATAAGGCGAGAGCACGCTGGGTTAGAGCAGATCGTGGCCAATCACGATGGAATGGAGAAAATCATGACATCATAATGACCACTTCCTGGTTACAAGCAATGTCATCACAGTCTCGTGACCGTGTGCCAGGCTCCCAGCCTCCTCACAGCGTCTGGTGCGGTTCACtcggggggggggtgggggggttaaaATAGAGATGGTAGAAAAATATATAGTCTTGATGAAATGTGTCTATTTATTCTCTTCATTATTGAATCGCAGCCATTACATGTAGTGTTAACACAGCAGTGTAGAGGGTTCAGGATAACTAGCGCTCTACTTACAAGAGAAGAACAACATGAGGACAAGGAGACGTCATTAACGCTCTTTCGTCTAGACACTTCAGGTTATTTCGTCTTACATTATTCATggttaacaataataataataatagtttagTCTTTTCATTGGCATCATTAGGCAACACGTTTTttttgtcatatatatatattttttttttagttaCTCAACAATATCTTAGTTACGATGTAAACTCCACAGTACTTATAACTTACTGTATCCATCACACAGTAAAACATAACGTTTACAAGGCAAATGGCCACTTAAGCATAGATTGGTTCATGAGataaaaatgagaagaaaaagaaaaacacacacaccacaaagaaAATGTCTAAATAAAATAAGAAACCGTTTGCATTGGGGGGTTTGTTCAAATTTGAAAAACAAAGCCAGGCTTGGGTTCGTTCGTTTTTTCTTCATTTACAAGTCAGGTGACCGTCAAAACTACTTCCAAAACCTCAATATAAACCATAGAGTTGGATCGAGGGCTCACTTGCCACAGAGCTGGTTTTTAGCACGGGCAGAGACATTGGTATGTGCCCTCTATTCAACTCTATGAGCTACAGGTACCTCCATATTAGCCCCTGATATTGTCCCTATCCTCCCCAATAACACTACTGATATCGTCCCAATCCTCCCCAATAACACTACTGATATCGTCCCAATCCTCCCCTATCCAATAACACTACCGATATCACCCCCCCCAATAACACTACCGATATCACCCCCCCAATAACACTACAGATATCATCCCCCCCAATAACACTACCGATATCATCCCCCCCAATAACACTACTGATATCATCCCCCCCAATAACACTACTGATATCACCCCCATCATCCCCCCCTAATAACACTACTGATATCATCCCCCCCAATAACACTACTGATATCACCCCCATCATCCCCCCCTAATAACACTACTGATATCATCCCCCCCAATAACACTACTGATATCATCCCCCCCCCAATAACACTACTGatatcaccccccccccaatAACACTACTGATATCATCCCCCCCAATAACACTACTGATATCATCCCCATCATCCCCCCTAATAATACTACTGATATCAGCTCCTACACTGCCAGGATATAACAGTTCTGCCCCTCTCCCATAGAACCTTACCCTAgcacaatgacatcatcaaattctctttgttaacaacatgGCTACCCAGATgcctggggtggggtggggggtgTTGAATCTCATAACCTGTTCTGTTGGGTCTTCCTTAAAACAACGGTCTGAAGCTACAACAGAGGAAGACTAaatgccccaaatggcaccctattccctacatagtacactacgttTAACTTGAgtcctatggggtagtgcactatataggtaaccaagggtaccatttgggacagggacaaagacagaataaaaagggggggggggcatcactGATATGATCCTTTCTCTCACAATGACATGATGTCTGACCAAACCCCCCCCCTTGGGGTTGCATctatagggagagggggggggggggggggggtcaatctAGAGTCtagacagagatggtgtgtgaCTACTATACTGTTGAGCTGGTTCGAACACTGGTCACCGGATACTGGATTTTTCAACCTAACTTCTGTTTCCCCTGGAGAGAAAACAAAACTGTGGGGACTCTGCTCAAGGTGTCTTTTTTTTAACGCCTGCTAGTTTAGGTTATTTCACTTGAACAAAACAGGAAGTCACCCTGATCCATATATTAACAGTAAATACATCCTCCAGTATTGTCTCAGAGGGCTGGGATATACAACAGACCACACCAGTGGGCCTGAACATACtgctgggtggtgtgtgtgtgtgtgtgtgtgttctgaaTACAGGTGACTAGCTGGTATGGGGGCTTATaaaggcggtgtgtgtgtgtgcgtgtgtgtgtgtgtcagtattttggctgctgCTACACTTTGACGTGTCTGTGTGATATTGGCATGTTGCTATGACAGCAAGTACGGCAGCTTACTTTGGCTTGGTGTTGAGCTGTTGAGCTGTcctacccaacacacacacacacacacacctctaataCTGTACTTGGAACACAAGAGAATATCCAGTTCACTACAGGAAGGAAACCGTTTTTTTGTTAAACTGCTGCAAATAgtcaaatcgtttttttttttaaagtgatgGTTCAGAAACTGATTAAAAAAAAGGGATTCCTCAGGATCTTTGGTCAAATATTATTCTGAAATGAACAAAATGAGAAAGTGCGCCCCCCCCCCATGTGCTCAGTTAAAATGTGAAATAATAAATGAAACGGTCAGACAGAATAACGGGTGTATTCTATACCTCACCCAGAGTGAAAACAAAAAGTATTCATAAAAGACAAAATACAAATCTAAAATACGCAAAACCCCATGATAGTTTACAGTACAAATGACAATATAGaacacattaaaaaaaaactggGTATCCATctttaaaacaaacacacagaacgcAGTTCAACTGGGCCATCTTCTGGTAACTGGTTTCTATGGTAACATCTGTTCTTGTCAATGAATGTTCTGTatgatgtcatgtttcatgtggagcccaggaagagtagctgatgcttcAGCAATATCTTGTAGGGATCCTAATAAcatacaacaaaaaatatatactttataccgtacctgtcaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1163368 lncRNA downstream 205 80283465 ~ 80284562 (-) True G1022452
TU1163415 lncRNA downstream 11107 80272803 ~ 80273660 (-) True G1022494
TU1163414 lncRNA downstream 12085 80271101 ~ 80272682 (-) True G1022493
TU1163329 lncRNA downstream 59204 80174292 ~ 80225563 (-) True G1022431
TU1163378 lncRNA downstream 76306 80208192 ~ 80208461 (-) False G1022461
TU1163450 lncRNA upstream 72233 80361797 ~ 80362041 (-) True G1022521
TU1163462 lncRNA upstream 96015 80385579 ~ 80440720 (-) True G1022532
TU1163510 lncRNA upstream 182421 80471985 ~ 80474716 (-) True G1022579
TU1163519 lncRNA upstream 207503 80497067 ~ 80497282 (-) True G1022588
TU1163520 lncRNA upstream 216019 80505583 ~ 80506477 (-) True G1022589
XM_036936482.1 mRNA downstream 156940 80101077 ~ 80127827 (-) True mthfd2l
XM_036936483.1 mRNA downstream 156947 80101077 ~ 80127820 (-) False mthfd2l
XM_036936484.1 mRNA downstream 157022 80101077 ~ 80127745 (-) False mthfd2l
XM_036936481.1 mRNA downstream 194489 80083983 ~ 80090278 (-) True LOC118937416
XM_036936479.1 mRNA downstream 221739 80045697 ~ 80063028 (-) True areg
XM_036936495.1 mRNA upstream 15998 80305562 ~ 80320402 (-) False LOC110536467
XM_036936494.1 mRNA upstream 15998 80305562 ~ 80320403 (-) True LOC110536467
XM_021622241.2 mRNA upstream 180108 80469672 ~ 80483518 (-) True LOC110536470
XM_036936507.1 mRNA upstream 398262 80687826 ~ 80689436 (-) True LOC118937419
XM_036936508.1 mRNA upstream 431062 80720626 ~ 80772588 (-) True LOC110536477
TU1163266 other downstream 125372 80155497 ~ 80159395 (-) False G1022395
TU1163509 other upstream 181875 80471439 ~ 80473767 (-) True G1022578
TU1163515 other upstream 198990 80488554 ~ 80489044 (-) True G1022584
TU1163536 other upstream 250888 80540452 ~ 80540979 (-) True G1022604
TU1164054 other upstream 604338 80893902 ~ 80898003 (-) True G1023036
TU1164194 other upstream 850420 81139984 ~ 81140579 (-) True G1023156

Expression Profile