RNA id: TU1163368


Basic Information

Item Value
RNA id TU1163368
length 934
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1022452
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80283465 ~ 80284562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaactggtgtgccttgttaaaagatcatttgtgaaatttctttccttcttaatgtgtttgagccaatcagttgtgttgtgacaaggtaggagtggtatacagaagataaacctatttgataaaagaccaagtccatattatggcaagaacagctcaaatatgcaaagagaaacgacagtccataatttctttaagacatgaaggtcagtcaatacagaaaatgttcaagaacttttaaagtttcttcaagtgcagtcgcaaaaaccatcaagtgctatgatgagtaagttcattagagttaccagcctcagaaattgcagcccaaataaatggtggaaatctgtcctttggtctgatgagtccaaatgttagatttttagtcccaaccgccatgtctttgtgagaagcagagtaggtgaacggatgatatcagcatgtgtggttcccactgggaagcaaggaggaggaggtgtgatggtgctttgctggtgacactgtctgtgatttatttagaattcaaggcacatttaaccagcatggcttccacatcattctgcagagatacaccatcccatctggtttgtgtttagtgggactatcattttttttcccaacaggacaatgatccaacacacctccaggctgtgcaagggctatttcACTAATATGGAGAGTGatgagtactgcatcagatgacctggcctccaaaatcacccgacctaaacacaattgagatggtttgggatgagttggactgcagagtgaagaaagtactcagcatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaatgctgtcatctaggcaaagggtggct

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1163415 lncRNA downstream 9805 80272803 ~ 80273660 (-) True G1022494
TU1163414 lncRNA downstream 10783 80271101 ~ 80272682 (-) True G1022493
TU1163329 lncRNA downstream 57902 80174292 ~ 80225563 (-) True G1022431
TU1163378 lncRNA downstream 75004 80208192 ~ 80208461 (-) False G1022461
TU1163380 lncRNA downstream 75004 80208192 ~ 80208461 (-) True G1022461
TU1163357 lncRNA upstream 205 80284767 ~ 80286643 (-) False G1022449
TU1163359 lncRNA upstream 205 80284767 ~ 80289564 (-) False G1022449
TU1163360 lncRNA upstream 205 80284767 ~ 80286643 (-) False G1022449
TU1163361 lncRNA upstream 205 80284767 ~ 80289564 (-) False G1022449
TU1163364 lncRNA upstream 205 80284767 ~ 80289564 (-) True G1022449
XM_036936482.1 mRNA downstream 155638 80101077 ~ 80127827 (-) True mthfd2l
XM_036936483.1 mRNA downstream 155645 80101077 ~ 80127820 (-) False mthfd2l
XM_036936484.1 mRNA downstream 155720 80101077 ~ 80127745 (-) False mthfd2l
XM_036936481.1 mRNA downstream 193187 80083983 ~ 80090278 (-) True LOC118937416
XM_036936479.1 mRNA downstream 220437 80045697 ~ 80063028 (-) True areg
XM_036936495.1 mRNA upstream 21000 80305562 ~ 80320402 (-) False LOC110536467
XM_036936494.1 mRNA upstream 21000 80305562 ~ 80320403 (-) True LOC110536467
XM_021622241.2 mRNA upstream 185110 80469672 ~ 80483518 (-) True LOC110536470
XM_036936507.1 mRNA upstream 403264 80687826 ~ 80689436 (-) True LOC118937419
XM_036936508.1 mRNA upstream 436064 80720626 ~ 80772588 (-) True LOC110536477
TU1163266 other downstream 124070 80155497 ~ 80159395 (-) False G1022395
TU1163509 other upstream 186877 80471439 ~ 80473767 (-) True G1022578
TU1163515 other upstream 203992 80488554 ~ 80489044 (-) True G1022584
TU1163536 other upstream 255890 80540452 ~ 80540979 (-) True G1022604
TU1164054 other upstream 609340 80893902 ~ 80898003 (-) True G1023036
TU1164194 other upstream 855422 81139984 ~ 81140579 (-) True G1023156

Expression Profile