RNA id: TU1167108


Basic Information

Item Value
RNA id TU1167108
length 1749
lncRNA type read_through
GC content 0.42
exon number 2
gene id G1025498
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83683265 ~ 83718776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagatttaaaatatatttattctCGTCGACGAGTCACCAACTGTACACTAGTTACATATCTGTAGTATTCACAGCACACAGCCTGTGttttgagtgtacaaaacattaagtacacctgctctttccatgacagactgaccaggtgaaagctatgatcccttattgaggtcactaaatccacttcaaaatcagtgtagatgaaggggaggtgacaggttaaagaaggatttttaatcaTTCAGAGGACGAATGGGCAACACAAAATATTTAagcgcctttgaacagggtatggtagaaggtgccaggcgcaccggtttgtgtcaagaactgcaacgctgctgggtttttcacactcagcagtttcctgtgtgtaataagaatggtccaccacccaaaggacatccagccaacttgacacaactgtgggaatcattggagtcaacatgggccagtatccctgtggaatgctttcaacaccttgtagagtccacgtcccaatgaattgaggctgttctgagggcaaaaggaggtgcagctcaatattaggaaggtgttcctaatgttttgtacactcagttcaTTCTTTATAggcctatatacacacacatatatacacaccacCGGTCAAAAGtcttagaacacctactcattccagggttctagaacacctactcattccagggttctagaacacctactcattccagggttttagaacacctactcattccagggttctagaacacctactcattccagggttctagaacacctactcattccagggttctagaacacctactcattccagggttttagaacacctactcattcaagggttttagaacacctactcattcaagggttttagaacacctactcattcaagggttttagaacacctactcattcaagggtttgcctttattttttactattttctacattgtagaatactagtgaagacatcaaaactatgaaataacacatagaatcatgtagtaaccaaaaaaaaaagtgttcaacaaatcagaatatattttaatatttgagattcttcaaaatagccaccctttgccttgatgacagctttgcacagtcttggcaccgttgcgccacttgggaggccccagCCAATTAATAAAATGGACTACTTTAAAATTGAGATAGCATGGGCAGCACTATTGAGGCGGTCACAgacctccatttctctctcaggAAACAATGTCATGCTGCTTCCTCGACTCGTCTACAGTCGCTGACTTTAGCATTACCCATCAAACACGCCCAACAAGTCCTTGTCTTTATGTGACTGTATTTAacctacaggtaactactaaAATAATGGGAACACTGGAGTAAATTAGGgaaacaaagtatattgaaagcaggtgcttccacatagGCGTAGTTCCTGAGTTAAATTCagtaattaacatcccatcatgcttagggtcacgTATACAAATTTTGGGTGGGCCATTAGTTTCATGCCCTGTGGATGgcagtggtcactgaatggtttgatgagcatgaaaacgatgtaaaccatatgccgtggacgtctcagtcaccagatctcaacccaattgaacaccaaattatggaatttctcgtgaAAGAATGGcgtctcatccctccaatagagttccagacacttgtagaattcATGCCAAGATGGACTGAAGCTGTTCTGAttggtggaggcccaacgccctattgagacacaaatatatatatatatatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167139 lncRNA downstream 14271 83668256 ~ 83668994 (-) True G1025514
TU1167106 lncRNA downstream 15106 83666345 ~ 83668159 (-) True G1025497
TU1167145 lncRNA downstream 38863 83636995 ~ 83644402 (-) True G1025520
TU1167158 lncRNA downstream 39743 83643223 ~ 83643522 (-) True G1025533
TU1167146 lncRNA downstream 50978 83631312 ~ 83632287 (-) True G1025521
TU1167187 lncRNA upstream 3850 83722626 ~ 83722852 (-) True G1025557
TU1167188 lncRNA upstream 5972 83724748 ~ 83725297 (-) True G1025558
TU1167189 lncRNA upstream 6791 83725567 ~ 83726081 (-) True G1025559
TU1167190 lncRNA upstream 9033 83727809 ~ 83728203 (-) True G1025560
TU1167193 lncRNA upstream 18492 83737268 ~ 83737630 (-) True G1025563
XM_036936539.1 mRNA downstream 322251 83341427 ~ 83361014 (-) True LOC110536498
XM_036936538.1 mRNA downstream 394316 83064063 ~ 83288949 (-) True LOC110536507
XM_036936536.1 mRNA downstream 394321 83064063 ~ 83288944 (-) False LOC110536507
XM_036936537.1 mRNA downstream 394322 83064063 ~ 83288943 (-) False LOC110536507
XM_036936534.1 mRNA downstream 721234 82873779 ~ 82962031 (-) True LOC100136308
XM_036936554.1 mRNA upstream 157158 83875934 ~ 83900716 (-) False ypel1
XM_036936555.1 mRNA upstream 157158 83875934 ~ 83902364 (-) False ypel1
XR_005034767.1 mRNA upstream 196037 83914813 ~ 83919629 (-) False LOC110536511
XR_005034772.1 mRNA upstream 197574 83916350 ~ 83919629 (-) False LOC110536511
XR_005034768.1 mRNA upstream 197575 83916351 ~ 83919629 (-) False LOC110536511
TU1167055 other downstream 56475 83621723 ~ 83626790 (-) True G1025467
TU1167071 other downstream 117691 83562302 ~ 83565574 (-) True G1025481
TU1165637 other downstream 1424300 82257489 ~ 82258965 (-) True LOC110536484
TU1165045 other downstream 1768898 81912957 ~ 81914367 (-) True G1023858
TU1164741 other downstream 2066036 81615253 ~ 81617229 (-) False G1023618
TU1167229 other upstream 155124 83873900 ~ 83900476 (-) False ypel1
TU1167230 other upstream 155124 83873900 ~ 83903039 (-) True ypel1
TU1168443 other upstream 1468550 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1894576 85613352 ~ 85614375 (-) True G1026978

Expression Profile