RNA id: TU1167110


Basic Information

Item Value
RNA id TU1167110
length 2406
RNA type TUCP
GC content 0.45
exon number 4
gene id G1025498
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83683265 ~ 83718776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactaaatccacttcaaaatcagtgtagatgaaggggaggtgacaggttaaagaaggatttttaatcaTTCAGAGGACGAATGGGCAACACAAAATATTTAagcgcctttgaacagggtatggtagaaggtgccaggcgcaccggtttgtgtcaagaactgcaacgctgctgggtttttcacactcagcagtttcctgtgtgtaataagaatggtccaccacccaaaggacatccagccaacttgacacaactgtgggaatcattggagtcaacatgggccagtatccctgtggaatgctttcaacaccttgtagagtccacgtcccaatgaattgaggctgttctgagggcaaaaggaggtgcagctcaatattaggaaggtgttcctaatgttttgtacactcagttcaTTCTTTATAggcctatatacacacacatatatacacaccacCGGTCAAAAGtcttagaacacctactcattccagggttctagaacacctactcattccagggttctagaacacctactcattccagggttttagaacacctactcattccagggttctagaacacctactcattccagggttctagaacacctactcattccagggttctagaacacctactcattccagggttttagaacacctactcattcaagggttttagaacacctactcattcaagggttttagaacacctactcattcaagggttttagaacacctactcattcaagggtttgcctttattttttactattttctacattgtagaatactagtgaagacatcaaaactatgaaataacacatagaatcatgtagtaaccaaaaaaaaaagtgttcaacaaatcagaatatattttaatatttgagattcttcaaaatagccaccctttgccttgatgacagctttgcacagtcttggcaccgttgcgccacttgggaggccccagCCAATTAATAAAATGGACTACTTTAAAATTGAGATAGCATGGGCAGCACTATTGAGGCGGTCACAgacctccatttctctctcaggAAACAATGTCATGCTGCTTCCTCGACTCGTCTACAGTCGCTGACTTTAGCATTACCCATCAAACACGCCCAACAAGTCCTTGTCTTTATGTGACTGTATTTAacctacaggtaactactaaAATAATGGGAACACTGGAGTAAATTAGGgaaacaaagtatattgaaagcaggtgcttccacatagGCGTAGTTCCTGAGTTAAATTCagtaattaacatcccatcatgcttagggtcacgTATACAAATTTTGGGTGGGCCATTAGTTTCATGCCCTGTGGATGgcagtggtcactgaatggtttgatgagcatgaaaacgatgtaaaccatatgccgtggacgtctcagtcaccagatctcaacccaattgaacaccaaattatggaatttctcgtgaAAGAATGGcgtctcatccctccaatagagttccagacacttgtagaattcATGCCAAGATGGACTGAAGCTGTTCTGAttggtggaggcccaacgccctattgagacacattatatatatatatatattggtgtTTCCTTTACTTTGGCAGCTCTCCAAGTCTCTCAGGTACTGTGTCTATGGTTACTACCAGAACCACATGCATGTCTATGTAACAAGGTTAAGGGCTCAGCATGTCACAGCCCAGTGTTTAGATTCATGGTAGATGTAGTTTTAGGGGGCTCAGCATGTCACAGCCCAGTGTTTAGATTCATGGTAGATGTAGTTTTAGGGGGCTCAGCATGTCACAGCCCAGTGTTTAGATTCATGGTAGATGTAGTTTTAGGGGGCTCAGCATGTCACAGCCCAGTGTTTAGATTCATGGTAGATGTAGTTTTAGGGGGCTCAGCATGTCACAGCCCAGTGTTTAGATTATATTAGCCCTACAGTACACCATCACAAGACCCACAGCAACAGGAAGACAACTCATCCTGTTCTGTAGCAGCACAGAAACATCCATGTCTgtctcactcctcctctcacgtctcactccttctctcacgtctcacGTTGTGTTTATCAGGCCTTTATTCACTTCACTCCCAGGCCTCcaggtaaggtgtgtgtgtgtgtgtgagagggttgggaggtgtgtgtgtgtgtgtgtgtgtgtgagtgggggtTTGTGGGTGGCGAGTATGGGTGCGAGGATGACGTTTGGCTGTGTAGGGAGACCAGGCCTCAGCAGGAAGCCCTCTCACATGTTGAAGCTCTCTCCACAGCCGCAGGTGCCCTTGATGTTGGGGTTGTTGAAGACAAACTCACTGGATAGCTTGGACTCCACAAAGTCCATCTCGGTCCCCAGCAGAGTGAGCTGGGCCTTCTTCTCTATAAATACACGCACACCTGCAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167119 lncRNA downstream 18043 83696830 ~ 83698034 (-) True LOC118937426
TU1167123 lncRNA downstream 18994 83692904 ~ 83697083 (-) False LOC118937426
TU1167124 lncRNA downstream 21185 83692703 ~ 83694892 (-) False LOC118937426
TU1167120 lncRNA downstream 22133 83692703 ~ 83693944 (-) False LOC118937426
TU1167122 lncRNA downstream 22133 83692904 ~ 83693944 (-) False LOC118937426
TU1167187 lncRNA upstream 4018 83722626 ~ 83722852 (-) True G1025557
TU1167188 lncRNA upstream 6140 83724748 ~ 83725297 (-) True G1025558
TU1167189 lncRNA upstream 6959 83725567 ~ 83726081 (-) True G1025559
TU1167190 lncRNA upstream 9201 83727809 ~ 83728203 (-) True G1025560
TU1167193 lncRNA upstream 18660 83737268 ~ 83737630 (-) True G1025563
XR_005034763.1 mRNA downstream 19471 83694680 ~ 83696606 (-) False LOC118937426
XR_005034764.1 mRNA downstream 19552 83694680 ~ 83696525 (-) False LOC118937426
XR_005034765.1 mRNA downstream 19571 83694680 ~ 83696506 (-) False LOC118937426
XM_036936539.1 mRNA downstream 355063 83341427 ~ 83361014 (-) True LOC110536498
XM_036936538.1 mRNA downstream 427128 83064063 ~ 83288949 (-) True LOC110536507
XM_036936554.1 mRNA upstream 157326 83875934 ~ 83900716 (-) False ypel1
XM_036936555.1 mRNA upstream 157326 83875934 ~ 83902364 (-) False ypel1
XR_005034767.1 mRNA upstream 196205 83914813 ~ 83919629 (-) False LOC110536511
XR_005034772.1 mRNA upstream 197742 83916350 ~ 83919629 (-) False LOC110536511
XR_005034768.1 mRNA upstream 197743 83916351 ~ 83919629 (-) False LOC110536511
TU1167055 other downstream 89287 83621723 ~ 83626790 (-) True G1025467
TU1167071 other downstream 150503 83562302 ~ 83565574 (-) True G1025481
TU1165637 other downstream 1457112 82257489 ~ 82258965 (-) True LOC110536484
TU1165045 other downstream 1801710 81912957 ~ 81914367 (-) True G1023858
TU1164741 other downstream 2098848 81615253 ~ 81617229 (-) False G1023618
TU1167229 other upstream 155292 83873900 ~ 83900476 (-) False ypel1
TU1167230 other upstream 155292 83873900 ~ 83903039 (-) True ypel1
TU1168443 other upstream 1468718 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1894744 85613352 ~ 85614375 (-) True G1026978

Expression Profile