RNA id: TU1167402


Basic Information

Item Value
RNA id TU1167402
length 1182
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1025728
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 84108183 ~ 84109397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgttgtcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgttgtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctccctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctccctgttgtattcagcatttcactgtaaggtctccctgttgtattcagcatttcactgtaaggtctccctgttgtattcagcatttcactgtaaggtctccctgttgtattcagcatttcactgtaaggtctccatgttgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167394 lncRNA downstream 3860 84103214 ~ 84104323 (-) True G1025721
TU1167381 lncRNA downstream 25803 84081540 ~ 84082380 (-) True G1025709
TU1167380 lncRNA downstream 27537 84060353 ~ 84080646 (-) True G1025708
TU1167350 lncRNA downstream 60926 84043774 ~ 84047257 (-) True G1025685
TU1167349 lncRNA downstream 71873 84031772 ~ 84036310 (-) False G1025684
TU1167397 lncRNA upstream 142 84109539 ~ 84111486 (-) True G1025723
TU1167398 lncRNA upstream 2811 84112208 ~ 84112639 (-) True G1025724
TU1167412 lncRNA upstream 26848 84136245 ~ 84137394 (-) True G1025735
TU1167422 lncRNA upstream 34608 84144005 ~ 84144273 (-) True G1025744
TU1167424 lncRNA upstream 35030 84144427 ~ 84144650 (-) True G1025746
XR_005034774.1 mRNA downstream 23983 84045512 ~ 84084200 (-) False grsf1
XM_036936582.1 mRNA upstream 125896 84235293 ~ 84380894 (-) False adamts3
XM_036936580.1 mRNA upstream 125896 84235293 ~ 84426152 (-) False adamts3
XM_036936581.1 mRNA upstream 125896 84235293 ~ 84426152 (-) False adamts3
XM_036936583.1 mRNA upstream 125896 84235293 ~ 84426152 (-) True adamts3
XM_036936585.1 mRNA upstream 392488 84501885 ~ 84719806 (-) False smarca2
TU1167230 other downstream 205144 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 207707 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 389575 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 390296 83715683 ~ 83717887 (-) False G1025498
TU1168443 other upstream 1077929 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1503955 85613352 ~ 85614375 (-) True G1026978

Expression Profile