RNA id: TU1167412


Basic Information

Item Value
RNA id TU1167412
length 1070
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1025735
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 84136245 ~ 84137394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGTGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGGGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGGGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGGGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGTGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGGGTGTGATTAGTTGTCATTTAATAACAGTGCATCGCCAGGTGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGTGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGTGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGTGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGGGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAAGGGTGTGATTGGTTGTCATTTAATAACAGTGCATCTCCAGGGGTGTGATTGGTTGTCATTTAATAACAGTGCATCGCCAGGGGTGTGGCTCTTTGCGTGTCTTCAGTGTGTATCTCCACAGGCGAGGGCAGCCGTCTTTAAAGGCCCTGATGACATCACACGACACCACACAGTAACAGTGGACCTCTCTGAGGAGGCTGCAGGCTGCGGCCAGGGAGCGCAGGGCGGAGTCCAGCTCTGGAGACGAGGTGGTCTGCAGTATGATTGTCTCCAGGGCGTGGCTGTAGCTCTGGGTGACCAGGTGTGTCTGCTGGACCAGGTCAGTAAATGTGAGGAGTTCCAGGTGCTGCAGAGGAACGCTGGGCTGCAATACGGAGCTGAAATGATCCATGGGAAGAGTGTGGTCCAATATCAGGCTTACCTGGAATATAATACACATATTACTACAACTTACTACAACATATTACAACATATTACACATTAATACACATAGTACTACAACATTACACATTCATACACATATTACTACAACATACTACaacatattacacatattactACAACATATTACAACATATTACACATTAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167398 lncRNA downstream 23606 84112208 ~ 84112639 (-) True G1025724
TU1167397 lncRNA downstream 24759 84109539 ~ 84111486 (-) True G1025723
TU1167402 lncRNA downstream 26848 84108183 ~ 84109397 (-) True G1025728
TU1167394 lncRNA downstream 31922 84103214 ~ 84104323 (-) True G1025721
TU1167381 lncRNA downstream 53865 84081540 ~ 84082380 (-) True G1025709
TU1167422 lncRNA upstream 6611 84144005 ~ 84144273 (-) True G1025744
TU1167424 lncRNA upstream 7033 84144427 ~ 84144650 (-) True G1025746
TU1167444 lncRNA upstream 47466 84184860 ~ 84195494 (-) False G1025752
TU1167446 lncRNA upstream 47466 84184860 ~ 84195494 (-) True G1025752
TU1167775 lncRNA upstream 83432 84220826 ~ 84227577 (-) False G1026027
XR_005034774.1 mRNA downstream 52045 84045512 ~ 84084200 (-) False grsf1
XM_036936582.1 mRNA upstream 97899 84235293 ~ 84380894 (-) False adamts3
XM_036936580.1 mRNA upstream 97899 84235293 ~ 84426152 (-) False adamts3
XM_036936581.1 mRNA upstream 97899 84235293 ~ 84426152 (-) False adamts3
XM_036936583.1 mRNA upstream 97899 84235293 ~ 84426152 (-) True adamts3
XM_036936585.1 mRNA upstream 364491 84501885 ~ 84719806 (-) False smarca2
TU1167230 other downstream 233206 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 235769 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 417637 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 418358 83715683 ~ 83717887 (-) False G1025498
TU1168443 other upstream 1049932 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1475958 85613352 ~ 85614375 (-) True G1026978

Expression Profile