RNA id: TU1167444


Basic Information

Item Value
RNA id TU1167444
length 2198
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G1025752
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 84184860 ~ 84195494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGTTTGGCCGCTTTTTTAGAAGGGTTTCTTTGTTCTCGGTTCCGGTTGGTCTTGGGTTTGTGAGGCCGGGTTGTCCTGTGTGGTCGGGGTTGTAGTGGTGGGAGCCTGTTGTGCCATTCGTTGAAGCCTGAAAAAAAGACGTTATGTTAGGCGAAGTCGACGTTCCTACAATGAGACTAGGTTGCCAGTCAAAACTTTTTTCGGCTGGCCCCTCTGAGCGTCTCTTTTTTAAAGGTGTAGAGGGTCTAAGTGATTATCTATGCCCCGTCGAAATTTTTGGGCCCGGTTTGTAGGTGGAGTAGGGGGTCTGGGTTGCCATCAGAGTGCCCGGGGTCCTTGTTGTCTCGTAGATCATCCGTTGTAGTGTGTCCCTGTGTAAAACTCAAAATAAGGGTAAGAGAAAAGTACAAATGAAAATAGGTAGCCAAAAGGAGATACCCCCGAAGTCCGTGTGGAATCTGCCTTCCTTACAGCATCACACGGATCTAGGGGCAgcccagccacgacgcgtttctgccttactcggcttcatcaggtggcaggGAGGAGAAAAGAAAGGTGCAAAAATAGGTGCACTTGGTCGTAGTACGGTAAGAAGGCCGTATTTTGGACCAGGGaaaatggggtgtgtgtgtgggtatatgtgtAGTTGAGGCTCGATGGTCTTGGAGGTCTATGAAGGTCCGTTGAAAAAAGGCCAAAAAGGGCGTTGATTCTCTGGGAGGTGGGTTCCGTGGTGTAGGAGTACCTAGATTAGGGGAGGAATCGCAAGGATTTAAAAGCGGCTCGGAGTGGTCCAGATTCGGGGTGTAGCATGAAGCTATTTAGGGGCCTTTTGTTCAAAAGGAGTAGAAGGATATTCGTGGGGAGTGTGGAGTACCAGCTGGCGGCTTGGTCCAGGTGAGGTGTATCCATGGTGTAGCATGGAGCTGGGTTCTGGTCTTTCAGTTGGAGTAGTCATCTTGGGTGCAGTTCTTTGGTAGAGGTCCAGCTTGTGTCTTCTCCAGGTGAAGTGTCTTCAAAAGATGTTCAGGCAGAATGGTACTGAGGCTGAGGGATGCTCCTCTTTTATAGGGAATGAGGGGGGTGTGGTTTTGCCAGGTGTCGAATCCGATTGGTGCATGAGGTGTGCATGCGGTGTTCATGTGAGAGGAACGGCCGTGGCTTGTCCAATGAGATCGCTTGGTTTTTGGGGAGAGGCGCCTAGTAGTCTGTTATGTGATGGAAAGGCCTCCATCGTTGATTCCAATGGGGAATTGTATAGGAGAAGTAGAcactttgcttttggggtgctgttTGGGTTGTGGTAAGTTAAGTAATTTTAAGTAAGACTAGACGTCCTAGGGGTCAAGAGGAGCCATACGTGGAGTTCCTGTGATTTGTAGAAGTATGTTAGATCCTCCTGTAAAAAGTGTGTGTTTGACCTTTGTGTCaccattgacttgtgtgttagcGTTGGGAGCGGTCTGCTCTGGTAGGGGAGGTGAGGTTCTGTGGGTCCAGgaaaggtagaggatagagtggACATCTGTGGGTTCCTGTAGAATTTTTAGTTGGGGTTCTAGGTGACCCATAGGTCTGGTTATAGCTCTTTGAATGTGGTTGAGTTATTTTTTCCTCCGATTTTTGTAGAGCCACGTTTACTCATATGTAGTAAGGTGCGATGTGTAGGGAGAAGTTGTGGCCGTGTTTTTTTGGTCTTTTTGTGGTGTTAGAGGGCTTGAACCTTGTTTCTTTATTGAGGGGTAGTTGCAGGTAGGGTTACTAGGGGGTGTTCCTTTTACCCGGATCGAAAATGGTGCTGTTATTATCTTTTCTAGTTGGCGCTTATTAGCGGAGTTTTAGCTTTGATCGCGTTCCTGTCCACTTGGGTTCCCGGATATGCGGTAGATTTGGCCGTTTTGCTGTGTTCAAGTCCACTTGGATTATCGGATGTACGGATCCGAAAAAACTTTTTTatgctgtttccagtgatgtgtgtcctccggaGTTGATGCAACCTGTCCTGTGGGGGATActtccctggggggggggtccagtgtAGAATATGGGTGTTTACTTGTGTGAGAGAGGTTTTTGATCCAGATGGGTGGTTTTAGGTGGTTCCTTTTTGGTTGTTCCATGTAATGtacctgtgatgtacagttgacagGCATTCCTGGTTGAGGCTTGTAGTGTGGGTGGGTCTCCTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167424 lncRNA downstream 40210 84144427 ~ 84144650 (-) True G1025746
TU1167422 lncRNA downstream 40587 84144005 ~ 84144273 (-) True G1025744
TU1167412 lncRNA downstream 47466 84136245 ~ 84137394 (-) True G1025735
TU1167398 lncRNA downstream 72221 84112208 ~ 84112639 (-) True G1025724
TU1167397 lncRNA downstream 73374 84109539 ~ 84111486 (-) True G1025723
TU1167775 lncRNA upstream 25332 84220826 ~ 84227577 (-) False G1026027
TU1167776 lncRNA upstream 25332 84220826 ~ 84227456 (-) True G1026027
TU1167787 lncRNA upstream 30899 84226393 ~ 84233690 (-) False G1026031
TU1167786 lncRNA upstream 37813 84233307 ~ 84235238 (-) False G1026031
TU1167788 lncRNA upstream 37813 84233307 ~ 84235238 (-) True G1026031
XR_005034774.1 mRNA downstream 100660 84045512 ~ 84084200 (-) False grsf1
XM_036936582.1 mRNA upstream 39799 84235293 ~ 84380894 (-) False adamts3
XM_036936580.1 mRNA upstream 39799 84235293 ~ 84426152 (-) False adamts3
XM_036936581.1 mRNA upstream 39799 84235293 ~ 84426152 (-) False adamts3
XM_036936583.1 mRNA upstream 39799 84235293 ~ 84426152 (-) True adamts3
XM_036936585.1 mRNA upstream 306391 84501885 ~ 84719806 (-) False smarca2
TU1167230 other downstream 281821 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 284384 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 466252 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 466973 83715683 ~ 83717887 (-) False G1025498
TU1168443 other upstream 991832 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1417858 85613352 ~ 85614375 (-) True G1026978

Expression Profile