RNA id: XM_036936858.1


Basic Information

Item Value
RNA id XM_036936858.1
length 3491
RNA type mRNA
GC content 0.52
exon number 30
gene id nedd4l
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9695082 ~ 9803536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGGCAAAGCAACGTTTCAGGAACCTGCACAACCTGAAACAATAAGACAGTTTTAAGACGCCCTGGCACCTTTTTTTTATTGGTCAGTTTGCTTTTTCAGTAGTTCTATAACCCGCGTGGTTGGCTTAATTTGTCTTTACTAACTCGAAGTCAGCTGTCACCAACGTTTTTGGACAAAGCCGAAGGATACTAGCTTTGAGTTGAACTGGAAGAAGCAACTGGAGTCTATGAATTCTCAGCCAAAACCGAAATAAATGTAATGTTAGTGCCCCTTTTCTACATTTATTATTTTTTGACCAAACATATCACACTGGAGaggattacaaaaaaaaaacggCATTATTTGCTTGTGCCAATGAAGGATTCGCTCTAtcaacagaggaacacacacattcATTGAGGAGGGGACACTTTGCTATATTGTTCAGGCTAGCCAGCtagctgtgtgtttttgtgttagcTCCTCAGGCTATATGGCTACGAATTTTGAACCCATACATGGCCTCTCCGAAGATGAAAATGAAACCAGAGTTCTCCGTGTCAAGGTTGTGGCAGGCATTGATCTGGCAAAGAAAGACATTATCGGAGCCAGtgatCCCTATGTCAAGCTGTCGCTCTACGTTGCGGATGAGAACAGAGAGCTTGCCTTAGTCCAGACTAAAACCATTAAAAAGACTCTAAATCCCAAATGGAACGAGGAGTTCTATTTCAGAGTTTGTCCTCTGAACCACAGACTACTCTTTGAGGTGTTTGATGAAAACAGATTGACGAGGGACGATTTCCTGGGACAGGTCGATGTGCCTCTCAATCATTTACCGACCGAGGACCCTACGATGGAGCGGCCGTACACGTTTAAAGATTTCCTCCTACGGCCACGAAGCCACAAGTCCCGGGTGAAGGGTTATCTACGGCTAAAGATGGCCTACCTGCCAAAGACTGGAAGTCCGGAGGAAGAGACCACTGAAGGGATTACCAGGGAGGAGGCAGAGGGCTGGGAGGTGAACGACTCTGCCGATCCCAGCGTCCAGAGGCCCCAGGCTGTCCAGCCCCCACTGCCCCCAGGATGGGAGGAGAAGGTTGATAACCTGGGCAGAACCTACTACGTCAACCACAACAACCGCTATACACAGTGGAAACGACCCAGTAACGTGGATGATGTTTCGGAGGTGGAGAATGACAATCAGCAGCGGGCGAACAGCATCCAGGCCCACCGGGTTTTCAGGTCTAGACGACACATCTCTGAAGACCTGGAGAACGAACACACAGAACCCAGAGACATGGAGGATtCGTGGGAGCCAATCACTGAAGAGAGTCCAGACGGCCCCCTACCTGGCCCCTCCTCCTCAATGGCGACGGCCATCCCCCAAAcgcctgccccaccacccctccaGGAGTTCTCAGAGGAGATCAacctgcacctctctctctctccaaccccatcTGGCCCCCCGCCTGACATCAACGGAGAGGTGGCCGCCCCCAGCCACGCCTCTGCTGTGCAGAGCCATCTGACCTCCAGGCTACGCTCCTCCAGTATGACAGATGGGGTCAGTGACCAGGcccagcctcctcctccagcGAGCTCCCAGACCAGAAGAACCAGAGCTCTAACAGTCACTGGAGTTGAGGAGCCCATGTCTCAGTCGACAGCCTATGCCCTGACCACACCAGGCCTACCTccaggatgggaggagaggaaggacgcCAAGGGACGCACCTATTACGTCAATCATAACAACCGCTGCACCACCTGGACCAAGCCTATCCTCCAGCACACTGAAGACGAAGCGAGTACCTCTGACTCCGGGGCTGCAGCTGAAGCCgcctccacctcttcctcagCCAACAACAATAGTCATCTGATTGAACCGCAAATACGCCGCGCCCGTAGTCTCAGTTCCCCTACCGTTACCCTGTCCTCCCCCTTAGAGGGGGCGGCCAACAACATAGCTGTGCGTCGGGCGGTGAAGGACACCCTCTCCAACCCCCAGTCCCCCCAGCCCTCCCCCTACAGCTCCCCAAAATCAGGACATCAGTCCCAGCAGAGCTTCCTGCCCccggggtgggagatgaggataGCACCCAACGGAAGACCCTTCTTCATTGACCACAACAGCAGGCTCACCACATGGGAGGACCCGAGGTTGAAGTATCCAGTCCACATGAGAACAAAAGCCTCTCTGGACCCTGGTGACCTGGGGCCTCTTCCTccTGGCTGGGAGGAACGCGTGCATGCAGATGGCAGGACCTTCTACATTGACCACAACACCAAAGCCACTCAATGGGAGGATCCTCGTCTACAGAGTCCTGCTATCACAGGGCCTGCTGTGCCATACTCTAGAGAATTCAAACAGAAATACGATTACTTCAGAAAGAAGTTGAAGAAACCGGCGGACATCCCTAACAGGTTTGAGATGAAGCTGCACAGGACCAACATCTTTGAGGAGTCGTATCGCCGTATCATGTCTCTGAAGAGACCAGATATCCTGAAGGCCCGCCTCTGGATCGAGTTTGAGTCAGAGAAGGGGCTGGACTACGGAGGTGTGGCCAGGGAGTGGTTCTTCCTGTTGTCTAAGGAGATGTTCAACCCTTACTATGGACTCTTCGAATACTCAGCCACAGATAACTACACACTACAGATCAACCCTAACTCTGGGCTGTGTAACGAGGACCACCTCTCATACTTCAAGTTCATTGGTCGAGTGGCAGGGATGGCCGTGTTCCATGGGAAACTATTGGACGGCTTCTTCATCCGACCATTCTACAAGATGATGCTCGGGAAGCAGATCACACTGAAAGACATGGAATCAGTGGACAGTGAATACTACAACTCTCTGAAGTGGATCCTGGAGAATGATCCTACTGAGCTGGACCTGCGGTTCTGTATCGATGAGGATAACTTTGGACAGACGTATCAGGTGGATCTGAAGCCCAGTGGCGGGGACATGGTGGTGACCAACCACAACAAAATGGAATACATCGATCTTGTCATTCAGTGGAGGTTTGTGAACCGGGTCCAGAAACAGATGAATGCCTTCTTGGAGGGATTCACTGAACTCACTCTCATCGACCTCATCAAGATATTTGATGAAAACGAGCTTGAGCTGTTGATGTGTGGTCTGGGTGACGTGGATGTGAATGACTGGCGACAACACACCGTCTACAAGAACGGTTACTGCCCCAACCACCCAGTTATACAGTGGTTCTGGAAGGCTGTCCTGCTGATGGATGCTGAGAAGAGGATCCGTCTGCTTCAGTTTGTCACCGGGACATCCAGAGTCCCTATGAACGGCTTCGCTGAGCTCTATGGTTCCAATGGGCCTCAGCTGTTCACCATTGAGCAGTGGGGAACGCCTGATAAGCTGCCCAGAGCACACACCTGCTTCAACAGGCTGGACCTGCCTACCTACGAGTCGTTTGATGACCTCCGAGAGAGGCTGCTGATGGCTGTGGAGAACGCTCAGGGCTTTGAGGGCGTTGATTAAACTA

Function

GO: NA

KEGG:

id description
K13305 NEDD4L; E3 ubiquitin-protein ligase NEDD4-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1180321 lncRNA downstream 6068 9686285 ~ 9689014 (-) False LOC110536932
TU1180353 lncRNA downstream 27152 9657184 ~ 9667930 (-) True G1035881
TU1180167 lncRNA downstream 127072 9567632 ~ 9568010 (-) True G1035736
TU1180153 lncRNA downstream 152866 9541423 ~ 9542216 (-) False G1035723
TU1181278 lncRNA upstream 30114 9833650 ~ 9834278 (-) True G1036655
TU1181280 lncRNA upstream 31774 9835310 ~ 9837776 (-) False G1036657
TU1181281 lncRNA upstream 31774 9835310 ~ 9835629 (-) True G1036657
TU1181293 lncRNA upstream 43095 9846631 ~ 9855027 (-) True G1036664
TU1181300 lncRNA upstream 60738 9864274 ~ 9864737 (-) True G1036670
XR_002475525.2 mRNA downstream 6027 9686289 ~ 9689055 (-) False LOC110536932
XM_021622605.2 mRNA downstream 131082 9562103 ~ 9564000 (-) True LOC110536926
XM_036936840.1 mRNA downstream 131566 9562103 ~ 9563516 (-) False LOC110536926
XR_005034826.1 mRNA downstream 488665 9037636 ~ 9206417 (-) False hcn1
XM_036936861.1 mRNA upstream 72994 9876530 ~ 9887383 (-) True dnajc21
XM_021622614.2 mRNA upstream 88067 9891603 ~ 9896872 (-) False bxdc2
XM_021622615.2 mRNA upstream 88067 9891603 ~ 9896872 (-) True bxdc2
XM_021622617.2 mRNA upstream 93492 9897028 ~ 9899621 (-) True rad1
XM_036936871.1 mRNA upstream 97573 9901109 ~ 9972778 (-) False sema4d
TU1180323 other downstream 6040 9686029 ~ 9689042 (-) False LOC110536932
TU1180320 other downstream 6040 9686285 ~ 9689042 (-) False LOC110536932
TU1180324 other downstream 6040 9686285 ~ 9689042 (-) True LOC110536932
TU1180145 other downstream 146947 9533500 ~ 9548135 (-) False G1035717
TU1179630 other downstream 652402 9037587 ~ 9042680 (-) True hcn1
TU1181316 other upstream 101768 9905304 ~ 9909831 (-) False sema4d
TU1181319 other upstream 101768 9905304 ~ 9909831 (-) False sema4d
TU1181323 other upstream 101768 9905304 ~ 9909831 (-) False sema4d
TU1181325 other upstream 101768 9905304 ~ 9909831 (-) False sema4d
TU1181327 other upstream 101768 9905304 ~ 9909831 (-) True sema4d

Expression Profile