RNA id: XM_021622615.2


Basic Information

Item Value
RNA id XM_021622615.2
length 1496
RNA type mRNA
GC content 0.46
exon number 10
gene id bxdc2
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9891603 ~ 9896872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTACCGTTCTGAGCCTGCGTGTCAGAAATCAAAATGTCGGCGCTCAAGAGAAAACGTGGAGGAAAGGGTCCAGGTGGAAAAGCAAAGAAAGTGAAATTAGTAGAAAATGGAAATAAACCCCAAACTACAGAGATGGAGCAGAACAAGGAAATCACCGTCCCAGCACCCGTGTCAATGGGTAAGTGGAGAAACAAAGAGCGAGTTCTTGTATTCTCTTCAAGGGGCATCAACTTCAGAACACGACATTTGATGCAGGACCTCAGGACAATGATGCCACACTCGAAAGCAGACACAAAAATGGACAGAAAGGACAAACTCTTCGTCATAAACGAGGTGTGTGAAATCAAGAACTGCAACAAATGCTTATTCTTTGAAGCAAAGAAGAAGCAGGATCTCTATATGTGGGTTGCAAATGTTCCCCACGGACCATCTGCAAAGTTCTTGGTCCAGAATGtccacacacTCGCCGAACTCAAAATGACAGGGAACTGTCTGAAGGGATCCAGACCACTGCTGTCGTTTGATCCTCAATTTGACACGGAGCCTCATTATGCACTGCTGAAGGAGCTCTTTATCCAGACTTTTTCAACTCCCCAGTACCACCCCAGGAGCCAGCCCTTTGTGGACCATGTCTTCACATTCACCATAACAGACAACAGGATATGGTTCAGAAACTATCAGATCATTGAGGAAGATGCATCGATGGTAGAAATTGGACCTCGCTTCGTCCTGAACCTCATCAAAATATTCCAGGGGAGCTTCGGCGGCCCCACACTCTTTGAGAACCCACACTTCGAGTCTCCGAACGCGCACCGGCGTGTGATCCGCATGGCCACCGCCTCCAGGCTGAGGGAGAAACAGATGGTCAAGGAGCTCCAGAAGCTGAAGAGGGTGGAGAACAAGGAGGCGGTGACCAGGGACGTGACCGATGACGTGTTTGCCACGCCGGCTGAGGAGAGGCCAGTCCACATTGAGCTGGAGGCTCCTGCAGCTAAAGTAGTGAAGAAGAACAAACACAAGGCTTTCAAACGACAGAGGAAGCAGACGCGTTAGGCTAGAGACTGGTTGGTTTGTTGGGTCTTCTAGAAGTCATCTGGAAAGGCTAGAGACTGGTTGCTTTGTTGGGTCTTCTAGAAGTCATCTGGAAAGGGATTACATTGGTTCTTTCTCAATTTGTCTTTCCTCAATTCCATGTCTTTTTTAATTTTCAAAACTCAAAACGAGAAGTTTGAAGGGAGTGACCTAGAATCTTCTCCAGTGCGTTTTAGAAGGAATCGGGAAAAGACAAATTAGGACATTTGTTTGGCCGTAAACTGTGAGGATCAAGTCGACCATCAAGTCTGCAGCCTGTGAAGGGCCATCTCAGAATACGTTGTTTATGTGTTGAATGTTTTGTTTCAGCTGCACACAAAAAAGTACTAAAGCAACTTTGTAACTTCTGTTGTGCTCCAGCTTTTCTTACAGTTCTGAAATAAAGTCTCGGTTTTAGTGTTTA

Function

GO: NA

KEGG:

id description
K14820 BRX1, BRIX1; ribosome biogenesis protein BRX1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1181305 lncRNA downstream 15318 9869880 ~ 9876285 (-) False G1036674
TU1181306 lncRNA downstream 15318 9870283 ~ 9876285 (-) True G1036674
TU1181300 lncRNA downstream 26866 9864274 ~ 9864737 (-) True G1036670
TU1181293 lncRNA downstream 36576 9846631 ~ 9855027 (-) True G1036664
TU1181281 lncRNA downstream 55974 9835310 ~ 9835629 (-) True G1036657
TU1181362 lncRNA upstream 92435 9989307 ~ 9995499 (-) True zgc:86839
TU1181388 lncRNA upstream 140889 10037761 ~ 10040455 (-) True G1036735
TU1181392 lncRNA upstream 147956 10044828 ~ 10045288 (-) True G1036739
TU1181408 lncRNA upstream 180136 10077008 ~ 10080380 (-) True G1036753
TU1181409 lncRNA upstream 185315 10082187 ~ 10083031 (-) True G1036754
XM_036936861.1 mRNA downstream 4220 9876530 ~ 9887383 (-) True dnajc21
XM_036936855.1 mRNA downstream 88067 9695082 ~ 9803536 (-) False nedd4l
XM_021622617.2 mRNA upstream 156 9897028 ~ 9899621 (-) True rad1
XM_036936871.1 mRNA upstream 4237 9901109 ~ 9972778 (-) False sema4d
XM_036936872.1 mRNA upstream 4237 9901109 ~ 9972778 (-) False sema4d
XM_036936866.1 mRNA upstream 4237 9901109 ~ 9972780 (-) False sema4d
XM_036936867.1 mRNA upstream 4237 9901109 ~ 9972780 (-) False sema4d
TU1180323 other downstream 202561 9686029 ~ 9689042 (-) False LOC110536932
TU1180320 other downstream 202561 9686285 ~ 9689042 (-) False LOC110536932
TU1180324 other downstream 202561 9686285 ~ 9689042 (-) True LOC110536932
TU1180145 other downstream 343468 9533500 ~ 9548135 (-) False G1035717
TU1179630 other downstream 848923 9037587 ~ 9042680 (-) True hcn1
TU1181316 other upstream 8432 9905304 ~ 9909831 (-) False sema4d
TU1181319 other upstream 8432 9905304 ~ 9909831 (-) False sema4d
TU1181323 other upstream 8432 9905304 ~ 9909831 (-) False sema4d
TU1181325 other upstream 8432 9905304 ~ 9909831 (-) False sema4d
TU1181327 other upstream 8432 9905304 ~ 9909831 (-) True sema4d

Expression Profile