RNA id: XM_036936865.1


Basic Information

Item Value
RNA id XM_036936865.1
length 4031
RNA type mRNA
GC content 0.50
exon number 20
gene id sema4d
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9901109 ~ 9983793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCACTCTCTCACACAAGCGCCATCAGTGCCCTCTGGAGACCTACCTTGCTTGTTTGCATATTGCTTTTCTCTGtcccacccccctctctatctcgaCTGATATCACTGCTGAGAAAGGATTTTTGAATTCGCAGCAGCACACACAGGTCACACCCGCCATGCTGTGAGCCACAGCGACAAACTTGACAAGCTCCGGCAACCACGGTCAACTATTTTAACGACCCAGACAAAGAGGATATTTTTTTCACCAAATCTGTGATGTAAACCATCTCATCCTTCACTCCCCTGTTTCAAGCTACTGTGCAGGACAGAAAAGGACGTTTCATGAATCAATATTCGCTAGTTGAAGCCATGACAGACAAAGGAAACTTCACGGTTCCGAAGCTGCTCCCGGAATCCAACATGGTGTTCGGAGTTCTAGGTGTGTTCTTGGGTCTACTCCTTGAGGTTTCTACACACGGACCCCACAGCATTCCCCGGACCTCCTGGAAACACGAAGAGCTCAAGTTGGTGGAGTTTTCTGAGCCCGGCATCTTCAACTATTCCACTCTGTTGTTGAGTGAGGATAAGGATGTGCTGTACGTGGGAGCGAGGGAGGCCATCTTTGAACTCCGCATGACCAATGTGTCAATCAAGAACAACAAGGTTCAATGGAAGGTGCCGGAAAGCCACATGACGATGTGCATTGTAAAAGGAAAATCTAAAGAGACAGACTGTCTAAACTACATCCGGGTGTTACAAGTGTTGGACGACAAGCGACTGTATGTCTGTGGGACACATGCCTTTCAGCCCGTCTGTCACTACCTATCCCTAAAGGATTTCAGTCTGGAGGGTCCAGCGGAGGACGGAAGAGGGAAATGTTCCTTTGACCCATCTCAGAGCTTCACAACGGTCATGGTTGATGGAGAACTTTACTCTGGAACGTCCTATAACTTCTTAGGAAGTGAGCCGATCATCTCCAGATATTCTCTTTCACAGAGTCTGTTGCGGACAGAGTATTCAACATCTTGGCTGAACGAACCCAGTTTTGTTTTTGCTGATGTCATCAGAGAGgggaagaacagtgcagatggtGAGGACGATAAGATCTACTACTTCTTCACTGAGGTGTCTGTGGAGTACGAGTTCTTTGGCAAGCTGCTCATCCCCAGGATAGCACGCGTCTGTAAGGGTGATCTGGGGGGCCAACGGACGCTACAGAAGAAATGGACCAGTTTCCTGAAGGCCAAGCTGGTGTGTTCCATGCCAGAGCTCAACTTCGTGTTCAACGTGGTTAATGACGTGTTCATACTGAAGACTgctgactggagagagactgtCATCTACGGAGTGTTCACATCCCAGTGGGGAAACGTAGGCCTGTCTGCAGTGTGTGCCTACGACATGTTGTCAGTAGAAAATGTGTTCTCCAAGGGGAAATACATGCAGAAAGCCACAGTGGAACAGTCTCACACCAAGTGGGTGAGGTACAACGGGATCACCCCCACCCCTCGCCCAGGAGCTTGCATCAACAACCACCACCGTCTCCAGAACATCAGCAGCTCTCTCCACCTGCCTGACAAGACCCTGCAGTTTGTTAAGGACCATCCCTTACTGGAAGACCCTGTCCTTCCCATCGGCAACGGGCCCAAACTCATCACCAAGGATGTCAGCTACACCCAGATCGCTGTGGAGAGGGTGCAGGCGTTGGACAACAACGTATATGACGTCATATTTACTGGGACCGATAAAGGACTTCTGCATAAATCGGTGGTGTATGACGGGCTGGTCCATACAGTGGAAGAGATTCAGCTTCTCCACAAATCTGAGCCTATCAAGACCTTGCTTCTGTCATCACAAGGGACGAGGTCCCTGTACGCTGGCTCAGACTCGGGCGTGGTGCAGTCTCCTACTGCGTTCTGTGACAAGTACCCATCCTGTTCAGACTGTATCTTGACCCGGGACCCTTACTGTGCCTGGGATCCAGACTCTTCCACCTGTGTCAACATCTTCCACACCCAGGGCCTCACGCACCGGAACTTGATCCAGAGCCTTAACGGTGATGCAGACAAGTGTCCCTCAGcgCCAGGGCTCTCCGTGGAGAACTACCAGCGGGTGACAGTTAAACCAGGGAGCTCGGCTGAGCTGCCATGCCTGGTTCAGTCCAACCTGGCCGTGGTGGTCTGGAAGCAGAACAGCAGCACCATGACCGAGGCCTCCAAGTTCCACCTGATGGGTGAGACGGGTCTGCTCATTTACAGCGTGGCCCCAGAGGACCACGGCCTGTACGAGTGCTGGTCACTGGAGTGGGCCCCTGTTGCAGGGAAGAACTTCAGCCGCCTCCTGGCTGGGTATGTCCTAGACCTGGATGTCCCCAGGAGGCCATCACCACGAGGCCACCCCCCTCAGACCGCCAGCACCCTCAGCTCTGCTCACCCCCACCACCAGTCCACCGCTGCCACTGAAGccGCCTCCtctgctgttcctcctctctctcctgttgacACTTCCTCATCCCTGTCCACCTCGGGAAgtagtccctctctccctccttcctccacctcctctgagGGGTTAGGGGTATGCCTGCTGCCCCCATCCCTCCAAGACCAGGCTTGGGGGGTTCAGGCTCAGGAGGCCTTCCTGCTCTTCTGTCTGGCCTTGGGTCCCAGTGATCTCCAAATTCACTGGCAGGTGAACGGGGCCCACCTGGAGACGCCCATCACAGAGTACCGCCACCCCTTGGTCCGGGGGGACCCCCATGGAGAGGTGCTGGTGAGCagctgggtgagagagagggccctggtcaagGACTCCAGCTACCAATGTGTCGCTGCGTCCAGCGCAGGAAATGACACATCTAAAGTGGACCTCAACATCCTCAGTAGAGATGAAGACAGTATTCCATCCAGAGATATGAGCCAATGGAGGAGTGCCCTCTCGGAACACAACAAACTGCTAAAGAGGTGGAAAAGAGCATGGGAAAGCTGTGAGGGTCAAGGTGCTCTCTGAGGTCACCTGAGCTCCACTGTTATTGGCTCCTAAGACAGGCTTCAGCCCAGGTGACCCTACCTGACCTTGGTCCAAAAATGCCAAGTCATGACGAGACATGGTACTATTCTCGCCGTTCGACGCCTGACGCAAGGCTTCAACCTCTGGCTTCGGTTCTGCAGTGTTCACCTGTTGTGGTGCATCAAAGATATTCTATAATGTTACAGGCCCTTCATACAGGCTTTAGCATAGGCCTTAGTCTCCcccttactgactgactggggacTGGGCAGATCAGTTGACTTTGCTCTTGGGAGGGTCTACTCTGCATTCCCAGTGAAAGCAGAAGATTCTCTGTGACTGAGTGGCGGCATGCAGTGTCAGATATCTCCACAGTGTCTGATATCTCCACAGTGTCTGATATCTCCACAGTGTCTGATATCGCCACAGTGTCTGATATCGCCACAGTGTCTGATCTTTCCTCAGTGATCGACAGTCTACCTTTGAAGTTTGCACTTTCTTTCTCTACTGTGGTAGCAGTGTCCATCTGTCTTTCACAGTGGGCAGCTGTTACAGATGAGAATGAGATGGGTTTTGTTTTTAGATAAGTTTTAAAGTATGGGAATATaaggtttgttttgttttatttagaTTATTTTACCGGTATGTCTAGACTAGAATATATCCACATTGATTTCTCAATCAAAATTAGAGTTGAGCTCTTTGTTTTACCATTACAGTACATAATATTACATTACCAGTGCTTTGCCAGAGTAACTAGAGATGAGTAAATTGTGTCAGTACAAAGATGTACAGACACAAATGTAACCTCTAAACTCCACTCTCCACTCCATAGTGCCTTTCAATAGGTTCAGATTGCTGAATAAATGCAGTTGTAGCCTATTAATGATTCAGATTCCTGTATTTTTGCCGACACATGTATTCTCTGTCATTATGTGGTCAGTTAAACTCTTGTCACTGAAATGTTTAATTCCATGTGTTAATCATATGACAATGTGGGAGAAGAAAATTGTATTAAAGAGAACTTGACAGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1181305 lncRNA downstream 24824 9869880 ~ 9876285 (-) False G1036674
TU1181306 lncRNA downstream 24824 9870283 ~ 9876285 (-) True G1036674
TU1181300 lncRNA downstream 36372 9864274 ~ 9864737 (-) True G1036670
TU1181293 lncRNA downstream 46082 9846631 ~ 9855027 (-) True G1036664
TU1181281 lncRNA downstream 65480 9835310 ~ 9835629 (-) True G1036657
TU1181362 lncRNA upstream 5514 9989307 ~ 9995499 (-) True zgc:86839
TU1181388 lncRNA upstream 53968 10037761 ~ 10040455 (-) True G1036735
TU1181392 lncRNA upstream 61035 10044828 ~ 10045288 (-) True G1036739
TU1181408 lncRNA upstream 93215 10077008 ~ 10080380 (-) True G1036753
TU1181409 lncRNA upstream 98394 10082187 ~ 10083031 (-) True G1036754
XM_021622617.2 mRNA downstream 1488 9897028 ~ 9899621 (-) True rad1
XM_021622614.2 mRNA downstream 4237 9891603 ~ 9896872 (-) False bxdc2
XM_021622615.2 mRNA downstream 4237 9891603 ~ 9896872 (-) True bxdc2
XM_036936861.1 mRNA downstream 13726 9876530 ~ 9887383 (-) True dnajc21
XM_036936858.1 mRNA downstream 97573 9695082 ~ 9803536 (-) True nedd4l
NM_001165235.2 mRNA upstream 5461 9989254 ~ 9995515 (-) False zgc:86839
XM_036936878.1 mRNA upstream 100139 10083932 ~ 10090132 (-) True LOC110536942
XM_021622625.2 mRNA upstream 152225 10136018 ~ 10150360 (-) False LOC110536943
XM_021622624.2 mRNA upstream 152225 10136018 ~ 10169675 (-) False LOC110536943
XM_036936879.1 mRNA upstream 593011 10576804 ~ 10623185 (-) True smad7
TU1180323 other downstream 212067 9686029 ~ 9689042 (-) False LOC110536932
TU1180320 other downstream 212067 9686285 ~ 9689042 (-) False LOC110536932
TU1180324 other downstream 212067 9686285 ~ 9689042 (-) True LOC110536932
TU1180145 other downstream 352974 9533500 ~ 9548135 (-) False G1035717
TU1179630 other downstream 858429 9037587 ~ 9042680 (-) True hcn1
TU1181812 other upstream 866409 10850202 ~ 10860082 (-) True LOC110536951
TU1181956 other upstream 1119291 11103084 ~ 11103448 (-) True G1037216
TU1181957 other upstream 1122142 11105935 ~ 11106320 (-) True G1037217
TU1182137 other upstream 1230158 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other upstream 1230158 11213951 ~ 11230832 (-) True LOC110536956

Expression Profile