RNA id: XM_036936878.1


Basic Information

Item Value
RNA id XM_036936878.1
length 2692
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110536942
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 10083932 ~ 10090132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGGGATAGGCTACTTCATTACACATGTAGAGAAATGTGTAAAGAAAAATAGTGAAACTTCTGCAAGAAGAACTTGGGGGTGAAGGAATAACGTTGCAGACTCGTATTATTACTAAATGAAGAGGATTTATCATCACCACTTGAAGAAATGTACAACTATGAAATTATATAAAAGAAGCTTGGATGAAGTCGAGTAACTGTCGCGCGCCGCTGGAAAGGATCTCTGAAATCGGCTCTAGACTAGAGCATCTTACGGCGAGTCTTTACTATTTACATATATAGCTGTACGGGATTCTAATTCGTTTCAATAGTCTATATTAAAAACTATGATTAAACATATATTTTGTTGGCTGTAGTCGCCGGTATAAACTATAGATAATcttaaaatcacattgtatttgtaTCTTTATTTGAAATGTAACATAATTCTGTGATAttacattaattagattaattgtattttttctgGTTGTAAGTTATTTTGTGGTTAAACACATTAAGAACAAAGGGTGTGCTTGTCGAGACCCTTTGAATTGACACTAAGATTTAAATTACAGTATACTTCAATCATAGACGAAATCAAATGTTTTTCTAGAGCAGCAACTCTGGATAATTAACGTCTCAATTCCGGATAGATGCTACCCAGATGCATTCATTAATTTTCGATCAAGAGAGAGGGATCAAAAAAAAACTAAAGTGTTAATAATCAACTTTAGAAAAAAATCTAGCTGGTCCATCACTTTCAACTCAGCTGTAAAAGGTGGGATATTCGTCGATCTCACTCTAAACAGGACTTTTAATACGCCTCTTTACTGATCTCTGCTGGACATTCGTGGAATAACATCTTGACAACCAGAGACGATGAACAAGCAGATATATATCCACTATAACTACACAGGGAAGCTGGAAAACCGTCAGAATGGAAAAATCACAGGTGGTGGCGTCACCTTGGATGCTAAAACCATCGTGTTCCTCATCATCTGTTGCTTCATAATCCTGGAGAACCTGATTGTTCTTGTAGCAATATGGAAAAACCATAAGTTCCACAACCGCATGTACTTCTTCATAGCCAACCTGGCGTTGTGTGACCTTCTGGCTGGGGTGGCTTATATCGTCAACCTCCTCATGTCAGGGGAGAAGACCCTTCACCTGTCCCCAGTGTTGTGGTTTGTAAGGGAAGGGAGCATGTTTGTAGCTCTGGGGGCTTCCACATTCAGTCTCCTGGCTATAGCTATAGAGAGACATCTGACCATGATTAAAATGAGGCCCTACGACGCCAATAAGAATTACAGGGTGTTCTTGCTCATAGGGACCTGCTGGCTCATAGCGATATCCCTGGGAGCATTGCCCATCCTGGGGTGGAACTGCTTGGACAACCTCCCTGACTGCTCCACAGTCCTACCGCTCTATACCAAGAAGTACGTGGCCTTCTGCATCATCATCTTCATGGCCTTGCTGCTGGCCATGTCCGTCCTGTACATACGCATCTACATGTTGGTGAGGACCAGCAGTCGGAAGGTGACCAAACATTCCAACTCAGAGCACTCCATGACCCTCCTCCGTACTGTCATCATCGTGGTCGGCGTCTTCATTGCATGCTGGATGCCCGTCTTCGTCCTCCTCCTCATCGATGTGGCCTGCGAGCACCGCTGCTGTCCCATTCTCTACAAGGCCGACTACTTCATAGCCCTGGCCGTGCTCAACTCTGCCATGAACCCTGTTATCTACACCTTGGCCAGCAGGGAGATGAGGAGAGCCTTCTTTAGCTTGGTCTGTGGCTGTCTGATGAAGGGGAATGTCTCCAGCAGTGGTGAGCCCAATAAGCCCAATAACCTGGAGCACAGCAGGAGCACAGCAGGAGCACAGCAGGAGCACAGCCATAATAATCCTAACAACCACAGCAGGAGCACAGCAGGAGCACAGCAGGAGCACAGCCATAATAATCCTAACAACCACAGCAGGAGCGCAGCAGGAGCACAGCAGGAGCACAGCCCATAATAATCCTAACAACCACAGCAGGAGCACAGCAGGAGCACAGCAGGAGCACAGCCATAATAATCCTAACAACCACAGCAGGAGCGCAGCAGGAGCACAGCAGGAGCACAGCCCATAATAATCCTAACAACCACAGCAGGAGCGCAGCAGGAGCACAGCAGGAGCACAGCAGGAGCACAGCCCATAATAATCCTAACAACCACAGCAGGAGCGCAGCAGGAGCACAGCAGGAGCACAGCCCATAATAATCCTAACAACCACAGCGGGAGCACAGCAGGAGCACAGCCCATAATAATCCTAACAACCACAGCAGGGCAGATGAGCAGCAGAAGGACATGGACAGTAGTCTGAATATTATAGTGGCACAGACCTTGATAAAGAGTCCAACATCATTGTGCGCCAATGTGGCCAATGGGTTAAGGTTTTCTGCTGGGCCCTGAACCTCCATATCTGAATCCTTCTGAGTGAACACAAGAGACTATGAAGTGTGGCAACGCGAGACATTGTAGCCCTATGCTGTGCATAGGATGGAGAGACATTGAAGGCCTATAATGTAActatactgaaaaaatatataaacgcaacatgtatagtgttggccccatgtttcatgagctgaaataagaggCCCAAAATtttccatgtgcacaaaaagcttatttctcttaaattTTGCACAccaatgtgtttacatc

Function

GO: NA

KEGG:

id description
K04290 S1PR3, EDG3; sphingosine 1-phosphate receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1181409 lncRNA downstream 901 10082187 ~ 10083031 (-) True G1036754
TU1181408 lncRNA downstream 3552 10077008 ~ 10080380 (-) True G1036753
TU1181392 lncRNA downstream 38644 10044828 ~ 10045288 (-) True G1036739
TU1181388 lncRNA downstream 43477 10037761 ~ 10040455 (-) True G1036735
TU1181362 lncRNA downstream 88433 9989307 ~ 9995499 (-) True zgc:86839
TU1181444 lncRNA upstream 32526 10122658 ~ 10123398 (-) True G1036785
TU1181452 lncRNA upstream 46088 10136220 ~ 10137464 (-) True LOC110536943
TU1181489 lncRNA upstream 115934 10206066 ~ 10206341 (-) True G1036830
TU1181579 lncRNA upstream 256606 10346738 ~ 10350200 (-) False G1036907
TU1181585 lncRNA upstream 257582 10347714 ~ 10350550 (-) True G1036908
NM_001165235.2 mRNA downstream 88417 9989254 ~ 9995515 (-) False zgc:86839
XM_036936865.1 mRNA downstream 100139 9901109 ~ 9983793 (-) False sema4d
XM_021622625.2 mRNA upstream 45886 10136018 ~ 10150360 (-) False LOC110536943
XM_021622624.2 mRNA upstream 45886 10136018 ~ 10169675 (-) False LOC110536943
XM_036936879.1 mRNA upstream 486672 10576804 ~ 10623185 (-) True smad7
XM_036936881.1 mRNA upstream 546488 10636620 ~ 10848410 (-) False dym
XM_036936882.1 mRNA upstream 546488 10636620 ~ 10848464 (-) False dym
TU1181316 other downstream 174101 9905304 ~ 9909831 (-) False sema4d
TU1181812 other upstream 760070 10850202 ~ 10860082 (-) True LOC110536951
TU1181956 other upstream 1012952 11103084 ~ 11103448 (-) True G1037216
TU1181957 other upstream 1015803 11105935 ~ 11106320 (-) True G1037217
TU1182137 other upstream 1123819 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other upstream 1123819 11213951 ~ 11230832 (-) True LOC110536956

Expression Profile