RNA id: XM_021622625.2


Basic Information

Item Value
RNA id XM_021622625.2
length 3977
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110536943
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 10136018 ~ 10169675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATACCCTAAACCCTTACTGCTTCACCCCTCTCCTTCCATAATGCAATTCactctaacaaaacaacaaattcATTTTGTCTGACCTAAATCAGAGGGTGTCTGAGCCATGAGTTTATAACACACTGTGCTTAACTTGTGTTGTGGAGGAGGGCTGGGGTATTATTATCTTTCAGCTACCCACCCTGCTATAAAAACTAGTGGTGCAACATCTCCACATAGCAGTAATGctgctctgctctccctccctactGTGAATCTGACAAGCCTGCCTTCCCTGCCTGCCGTCTCTCAACTCCTCTGTTGCTCTGCTCACCAGCCTGTTTACGTCTGCcagggacacacacacctctctccgcTCCGGTCCGGTCTGGCGGTCCACTGTTAACCTCCTTTAGCTGCTACTTGTCTTTGTATTTGGAAGTGTTGGATATTTCCTGGTTTTTGTGAATGGGCGGCCGATGCGAGGTGGCTGTGACTGTGAATGGACTGACTGTGTCAGCTCTGGGTACACTATTCTGAAGAGGCAATGTGACAGGTCTCTGGACACCACTGGTAGACTCTGAATTATAAACAAACGGAAAGAAAGGAATTAAGAAGATCAGTGAGAGGAGAAGGATGGGCCACAGTGAAGATGACCTGATTGGGATTCCGTTCCCCAACCACAGCAGTGATGTCCTGTGCTGCCTCAACGAACAGCGGCGCGCCGGGTTGCTCTGTGACGTGGTGCTCATCGTACGCGACCAGGAGTACCAGACCCACCGCTCGGTCCTCGCCGCCTGCAGCCTGTACTTCAAGAAGCTCTTCACCGTGGCCTCGGACGGAAGGGACAAGCACAGTGTGTATGAGATAGACTTCGTGGCCCCGGAGTCACTGACGGCCATCTTGGAGTTCGCCTACACATCTACGCTAACGGTGACGGCGTCCAACGTGAAAGAAATTCTTGGAGCGGCTCAGATGTTGGAGATCCCCTGCATCGTCACCGTCTGTCTGGAGATTATGGACTCTggcaagggaggaggaggagagggagatgaggaggaagacgaagaggaggaggaacaggagggggaggaggaggaggaagagtcgAGGAAGGACGAGCAGGAGGTTCATGAGGAGGACAACGCCAGTGAGTGGTCAACGAGGTCGTCAGAGAGTCAGGACCAGGCCGAGTCGGAGAGAGGAGCACCACCCAGTACCTCTCAGTACCAGCACCAGTATGAGCTGCAGAGGAACAGGAAGTGCACAGACAAAGACTCTCAGTGTGAGAAACCCAGCCCGGAGCATGAGCGCATGGAGAGCCGAGCCCTCAAGGACTTTTCCATTGAGTCTCTGCTACAGGAAGGGCTGTACCCTAAACTGCCATCAGTCCTGGACAGGAGGGACAACTTTTCCCCTCTGCTCCCTGGCTTCTACCCTCCCATGTGGGCTGCAGAGTTCCCAGGATTCCCCCCGCAGGTCCTAGACCCCAGCCACCACGCCCAGACCCCGACCCTCCACCGTTCCTCCCACCCTTCTCAACTGGACAACCGACCCTTAGACCTGGCCGTGAAGAGAGAGGTCGTCAAGGAGGAGCTGAAGGAGGAAGTCCCTCCCAGCATGCTCCACAGTGACTTCCTGAAAGACTTAATGACCTCCGGCCTGGGAGTGGGGGTGGTACGGTCCGAGGGGCCTCACCTCCACCCGGGTCAGATAAAGCAGGAGGAAGACTTCCGCTCATACCTGAGCTTCCTGAGTGCATCAAGCCACCTGGGGGCACTGTTCCCTCCCTggcagatggaggaggagaggaagatgaagcCCAAAGCATCCCAGCAGTGTCCCATCTGTAACAAGGTGATCCAGGGAGCAGGGAAACTACCCAGACACATgaggactcacacaggagagaaaccatacaTGTGCACCATCTGTGAGGTGCGCTTCACCAGGCAAGACAAGCTGAAGATCCACATGCGGAAGCACACAGGAGAGCGGCCCTACGTCTGCCTCCACTGCAACTCTAAGTTTGTCCACAACTACGACCTGAAGAACCACCTGCGTATCCACACAGGGGTGCGGCCCTACCAGTGTGAGCACTGCTACAAGAGCTTCACACGCTCAGACCACCTGCACCGACACATCAAGAGGCAGAGCTGCCGCGTCTCACGCCCTCGACGAGGCCGCAAGCCCGCCGCCTGGCGCTCAGCCAACAACTTCCTGCAGGGCCCTCCTGCCTCGGCCAATCACCACGAGGATGGCAAGGGCGGCTGCCGGCTTCTGCCCTCCTCCCATAGAGGCGTTAGAGGTCACGGTCTGGgcctaggggagagagagagacaggccctGGGTGGTAAGGGCCTGGGCTATAAGGACTTGGAcagtgacagcagagagagccGGGAGGGCAGGGAGGCCAGAGAGGGCCGGGAGGCTAGAGAGGGCCGGGAGGGCCGGGAGGCTAGAGAGGTTCGGCATCACCAGTCAGACAGGAAGCATGTGGTTGACAAGGTGgagctggagagacagaggggcgtgTTCACCTTTGCCCTGGCGGGGCCTGGGGGGGAAGTCCTTACCCACCCTCCATTTTACACCCCGACCCCTGACCCCTGGACCATTAGACTGGAGAACCACGCCTCTCCCATCCCTGAGCCGACTAACTGACACAGATTAAAGATGTTAGAACAGAGACAGTGCCGGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGACACTTCCAACAGATAACTGATGCTTCATCTCAGACTTCTAAGAACAATACAGAACAGAAAGTTCTCTGCCTGATAGATGTTCCACCTGCTGTTTAGAGATACAAGGATATTAGGCTGAGGAGATGAGAGTTTGAGGGGAGTGATGTCTGGGAATATAAATGTATAGAAAACAGGGGAATTACTGGAAAACAGTTGATTTTAGACATATCAGATCAAAATCACAAGGatttttataaaaacatttaatttgTAGAAATAAAACTGGATGAATAGATGTTGTATGTTgcaaaagtacacacacacaaaataatacTCTCAGGACATTATATAATTGTTTATCTTTGGATTGTAATTGTTTATCTTTGGATTCACTACAATCAATGTAAATGTGTAATTCATAGTATACTTAATATTAGCAATAGGTTGTTTCTCAAATTCACAGTCTACAAAAAAATAAACCGATAATATCAGCCGTTATTTATAAACGACAAACAGATTCCAAATCCATCCAAAGTTGTAGACCAACATCAGTTCTAATGGGCAGGGTAGTGTAAGCCAACGAAGAACATTCAAAACCAGGACAAATTATTCACTTGacttaaaaacaaatatatataatatagatcCAAAACTTGTTTTCACCCTTGTATTGCCTTGTTCTCAGGTTTTGTAAATATCTACAAAATGTTTTAAAGATTTTGACCATAGTAATATtgaatattgttgtattatatttttttttatcatcgATAACCCATCCAAAGGTGTGCCGTTTGATATTTCACACATTTTTCACAAGCCTTGTGTTACATATGATATCTGTGTTTCTTCTAAAGACCAAGACGTGTACGATTCGTTAGACTGATATACACTGAATTATTGCTTTAGCTATGCCCTGCTCCCGATTGGAGCGTTAAGACCTTGAAAGAGGATTCTACCCTATGTTCATATAGTGCTCTTAACTGATCTATGTACAAATATTGCTATTCAGAATTGTTTGAATTGAAATGAAATGGGAAACTATTTTCTTGCTATTTATGCATATTTAAATGAGCCTTGGCTATATTTAGCAAATATGTTGTTTTATAAAGACACTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1181444 lncRNA downstream 12620 10122658 ~ 10123398 (-) True G1036785
TU1181409 lncRNA downstream 52987 10082187 ~ 10083031 (-) True G1036754
TU1181408 lncRNA downstream 55638 10077008 ~ 10080380 (-) True G1036753
TU1181392 lncRNA downstream 90730 10044828 ~ 10045288 (-) True G1036739
TU1181388 lncRNA downstream 95563 10037761 ~ 10040455 (-) True G1036735
TU1181489 lncRNA upstream 55706 10206066 ~ 10206341 (-) True G1036830
TU1181579 lncRNA upstream 196378 10346738 ~ 10350200 (-) False G1036907
TU1181585 lncRNA upstream 197354 10347714 ~ 10350550 (-) True G1036908
TU1181582 lncRNA upstream 197563 10347923 ~ 10351625 (-) False G1036907
TU1181583 lncRNA upstream 197563 10347923 ~ 10349985 (-) False G1036907
XM_036936878.1 mRNA downstream 45886 10083932 ~ 10090132 (-) True LOC110536942
NM_001165235.2 mRNA downstream 140503 9989254 ~ 9995515 (-) False zgc:86839
XM_036936870.1 mRNA downstream 152225 9901109 ~ 9983793 (-) False sema4d
XM_036936879.1 mRNA upstream 426444 10576804 ~ 10623185 (-) True smad7
XM_036936881.1 mRNA upstream 486260 10636620 ~ 10848410 (-) False dym
XM_036936882.1 mRNA upstream 486260 10636620 ~ 10848464 (-) False dym
XM_036936883.1 mRNA upstream 486260 10636620 ~ 10848464 (-) False dym
XM_036936884.1 mRNA upstream 486260 10636620 ~ 10848464 (-) False dym
TU1181316 other downstream 226187 9905304 ~ 9909831 (-) False sema4d
TU1181812 other upstream 699842 10850202 ~ 10860082 (-) True LOC110536951
TU1181956 other upstream 952724 11103084 ~ 11103448 (-) True G1037216
TU1181957 other upstream 955575 11105935 ~ 11106320 (-) True G1037217
TU1182137 other upstream 1063591 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other upstream 1063591 11213951 ~ 11230832 (-) True LOC110536956

Expression Profile