RNA id: XM_036936879.1



Basic Information


Item Value
RNA id XM_036936879.1
length 1536
RNA type mRNA
GC content 0.49
exon number 4
gene id smad7
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 10576804 ~ 10623185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTTTAGGACCAAACGAACTGGGCTCGTCCGGCGACTCTGGAGGAGCCGTGCGCCGGTCGAGGGCGACGGGGATGCGGATACACGAACGCATGGATCCGGGGGTTGCTGTATGGGTAAATCGACGAAGGTTGCCGGAAAAACTAGCGCCGGAACGGATGCTGAATTGAAATCCCTGACCCACTCGATACTGAAACAAATAAAAGAGAAACAATTAGAGGGGCTCTTGCAAGCGGTCGAGTCAAAGGGGGGTGCGCGGAGCCCCTGCCTGCTCCTACCCAGCAAAGTGGACACCAAACTGGGTCAGCAGTCTTATTCCCTCCCCTTGCTGCTCTATAAAGTGTTTCGGTGGCCGGACCTCATGGATTGCTCGGAATTAAAAAGGCTGTCTTGCTGTGAATCCTATGGGGAAATTAACCCAGAACTCGTTTGCTGCAATCCGCACCACATGAGCAGGCTTTGTGAACTCGagtccccccctcctccttattCCCGATATCCAATGGACTTTCTTAAACCACCCGATTCTCCAGACTCGGGGCCTTCATCCACAGAGACTGGAGGAACTACCTACTCGGCCCCTGTGGGGCTCTCAGATCCCCAGGCTCTCCAGGAGTCGGGCGACAGATCCCACTGGTGCGTGGTCGCGTACTGGGAGGAAAAGACCCGTGTGGGGCGCCTCTACTCGGTCCAGGAGCCTTCCCTGGACATCTTCTACGACCTACCTCAGGGGAACGGCTTCTGCCTGGGCCAGCTCAGCTCCGACAACAAGAGCCCGCTGGCTCAGATGGTGCGGACCAAGATCGGCTACGGCATCCAGCTGAGTCGCGAGCCCGACGGGGTGTGGGTGTACAACCGCAGCTGCTACCCCATCTTTATCAAGTCGGCCACACTGGACAATCCCGACTCGCGGACTTTACTGGTGCATAAAGTGTTCCCCGGATTCTCCATTAAGGCCTTTGACTTTGAGAAGGCAGACAGCCTGCAGAGGCCTAACGATCACGAGTTCACACAGCAGCCGAGGACTGGGTTTACTGTACAGATCAGCTTTGTGAAGGGCTGGGGTCAGTGCTACACAAGACAGTTTATTAGTAGCTGCCCTTGTTGGCTGGAGGTCATATTCAACAACCAATAAAAACGGATTACCTTTGGATaaccttcctcccccctcttcttcctcGTTCTCCTCATTCGAGGACCAGGTGGGAACGGAGGTCAGAGACTAGTCCCTCACCTTTCCTTTTTTTTCCCAGAAGACAGTGCTTCAAAAAGGAAGATGTTTAAAGAAGAGACAAACAAAACCCAATAAACTTGTTAAATATGACAAATGACTCAAAGATTTAATTAAAAGTGAAATTAAAAGcgaaaatgtattttatgttatatatataaatatattattacTTGTAAATATGAAGACGTTTTATATGCATCATTATTTATGTATTGTGCAATGTGTTgatgagaaaaataaaataagatgCACTTTGCTTAATATAAATACAAACAAAGAAATGCCAAAATAAATAAGAGAAAT

Function


GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19631 SMAD7; mothers against decapentaplegic homolog 7

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1181688 lncRNA downstream 5075 10569362 ~ 10571729 (-) True G1036995
TU1181676 lncRNA downstream 29067 10547294 ~ 10547737 (-) False G1036986
TU1181677 lncRNA downstream 29067 10547294 ~ 10547737 (-) True G1036986
TU1181646 lncRNA downstream 107591 10465177 ~ 10469213 (-) True G1036959
TU1181644 lncRNA downstream 111725 10464776 ~ 10465079 (-) True G1036958
TU1181736 lncRNA upstream 35305 10658490 ~ 10659160 (-) True G1037037
TU1181764 lncRNA upstream 91399 10714584 ~ 10715908 (-) True G1037058
TU1181795 lncRNA upstream 176827 10800012 ~ 10800419 (-) True G1037087
TU1181824 lncRNA upstream 231788 10854973 ~ 10855345 (-) True G1037113
TU1181827 lncRNA upstream 239554 10862739 ~ 10862946 (-) True G1037116
XM_021622624.2 mRNA downstream 407129 10136018 ~ 10169675 (-) False LOC110536943
XM_021622625.2 mRNA downstream 426444 10136018 ~ 10150360 (-) False LOC110536943
XM_036936878.1 mRNA downstream 486672 10083932 ~ 10090132 (-) True LOC110536942
NM_001165235.2 mRNA downstream 581289 9989254 ~ 9995515 (-) False zgc:86839
XM_036936874.1 mRNA downstream 593011 9901109 ~ 9983793 (-) False sema4d
XM_036936881.1 mRNA upstream 13435 10636620 ~ 10848410 (-) False dym
XM_036936882.1 mRNA upstream 13435 10636620 ~ 10848464 (-) False dym
XM_036936883.1 mRNA upstream 13435 10636620 ~ 10848464 (-) False dym
XM_036936884.1 mRNA upstream 13435 10636620 ~ 10848464 (-) False dym
XM_036936885.1 mRNA upstream 13435 10636620 ~ 10848464 (-) False dym
TU1181316 other downstream 666973 9905304 ~ 9909831 (-) False sema4d
TU1181812 other upstream 227017 10850202 ~ 10860082 (-) True LOC110536951
TU1181956 other upstream 479899 11103084 ~ 11103448 (-) True G1037216
TU1181957 other upstream 482750 11105935 ~ 11106320 (-) True G1037217
TU1182137 other upstream 590766 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other upstream 590766 11213951 ~ 11230832 (-) True LOC110536956

Expression Profile