RNA id: TU1182137


Basic Information

Item Value
RNA id TU1182137
length 1601
RNA type TUCP
GC content 0.52
exon number 8
gene id LOC110536956
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 11212672 ~ 11231102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAAGCCAAAAGCGTAATGGCGCCGGACAGGTTGTGATGAGCTAGCGGGAATAGTAACGAATCGACCTACACCCTCGGAAAGAGTACGTGGTGAAATAAGTAAAGAAACCTAAGCTAAATTGCTCATCGCGAAAATGCAGATCACTTTGAAAACCCTCCAGCAGCAGACATTTAAAATCGACATAGACGAAGAGGAGACGGTAAAAACCTTAAAGGAAAGAATTGAGAATGAGAAGGGAAACGATGGTTTTCCGGTTGCAGGGCAGAAATTGATATATGCAGGGAAAATCCTAAATGATGACACTGCTATCAAGGACTATAAGATTGATGAGAAGAACTTTGTGGTTGTCATGGTGGCAAAGCCTAAAGCAGCCCCAGCAGCTGCCCAGCCTTCCGGTTCTGCCGCCACCACCTCCTCCAGCACTACAGCCCCCACTGTACCCACTGCTGCCTCGCCAGGCTCAGATAACCCACCAGAGGGGTCCAAACCAGCCGAGGAGAGGCCCTGCAGCACTTCAGCACCAGCATCAACCCCCACCAGGTAGGTCTGGTTTGGCAGTCACTGCTGTGTCACAAATGACAACTTATTCTCTATAtcgttcactacttttgaccagagccctgttgcctatatagtgcactacatagggagtaaGGTGCCATTGGGGGATGCTGTCGATGTTACCTTGGCCTGAAGACCACAGCCCAGCTGGCAGCCATTAATAGGAGGCTGTTTTTACCGGTCCATCTCAACGGTAGCCTCATGCAAAGGCACAGACACGCCGGTAGCGTTTGCCAGCTGAGactacttagcacctctgaacagagtgCCAGCCGTCATTTGCGAACtgattctacatgtagaatcatgtGTAAAAATGTCGGCAGTCGCCCACCCTGAAACACACTGAACGAACGGCAGATGGACGTgcggtgtgtgtgttctctcctaAGACGAGGCCAGTAGACATGTTGCTAGTGTCTGAGCTTATAGAAGGATGAATGCATCTCTTTGTGGTTGTATTTTAGTACAGGGCAGACCATGTGATATACTACTTGAACAGTACTCATCGGTGTCACGCTCCTTCTCTTTCAGTTCCTCTGGTCTATTGACAAATGTGAACATGTTCGAGGAGGCAACTTCTGCTCTGGTGACAGGCCAATCGTATGAGAACATGGTGACAGAGATGATGCTGATGGGCTACGAGAGGGAGCAGGTAGTGGCAGCGCTCAGAGCCAGCTTCAATAACCCAGACAGAGCTGTGGAGTACCTGCTTACAGGGATCCCAGCTGGGGAGGAGAGCCATGCGGGTGCTGACCCAGTGGTGCCCTCTGTGGGTGGAGGAACTCCAGCTCTCAACACAGGCAGCATGACGACCCCCGCCAGCGTTGCAACAGGAGCCAATCCTCTGGGGTTCCTGGTTAACCAGCCTCAGTTCCTCCAGATGAGACGGATCATCCAGCAGAACCCCTCTCTGCTCCCTGCCTTACTACAGCAGATAGGGAGGGAGAACCCCCAGCTTCTGCAACAAATCAGCAGCCACCAAGAGCAGTTTATCCAGATGCTGAACGAGCCAGCCCaggaggggggacagggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1182151 lncRNA downstream 7547 11205968 ~ 11206404 (-) True G1037395
TU1182143 lncRNA downstream 16339 11197385 ~ 11197612 (-) True G1037387
TU1182141 lncRNA downstream 24600 11189120 ~ 11189351 (-) True G1037385
TU1182140 lncRNA downstream 27497 11186213 ~ 11186454 (-) True G1037384
TU1182018 lncRNA downstream 53554 11160198 ~ 11160397 (-) True G1037273
TU1182171 lncRNA upstream 9942 11240774 ~ 11241184 (-) True G1037414
TU1182178 lncRNA upstream 16625 11247457 ~ 11250029 (-) True G1037417
TU1182183 lncRNA upstream 20943 11251775 ~ 11251964 (-) True G1037419
TU1182186 lncRNA upstream 30621 11261453 ~ 11262059 (-) True G1037422
TU1182207 lncRNA upstream 90392 11321224 ~ 11321494 (-) True G1037440
XM_021622637.2 mRNA downstream 162166 11046648 ~ 11051785 (-) True LOC110536955
XM_036936910.1 mRNA downstream 222376 10969940 ~ 10991575 (-) True LOC110536954
XM_036936908.1 mRNA downstream 222378 10969940 ~ 10991573 (-) False LOC110536954
XM_036936911.1 mRNA downstream 222378 10969940 ~ 10991573 (-) False LOC110536954
XM_036936909.1 mRNA downstream 223423 10969940 ~ 10990528 (-) False LOC110536954
XM_036936914.1 mRNA upstream 24327 11255159 ~ 11319420 (-) False LOC110536958
XM_036936913.1 mRNA upstream 24327 11255159 ~ 11320075 (-) False LOC110536958
XM_036936916.1 mRNA upstream 24327 11255159 ~ 11320075 (-) False LOC110536958
XM_036936915.1 mRNA upstream 24327 11255159 ~ 11320076 (-) True LOC110536958
XM_036937391.1 mRNA upstream 174165 11404997 ~ 11406085 (-) True LOC118937658
TU1181957 other downstream 107631 11105935 ~ 11106320 (-) True G1037217
TU1181956 other downstream 110503 11103084 ~ 11103448 (-) True G1037216
TU1181812 other downstream 353869 10850202 ~ 10860082 (-) True LOC110536951
TU1181323 other downstream 1304120 9905304 ~ 9909831 (-) False sema4d
TU1183218 other upstream 375519 11606351 ~ 11615943 (-) True G1038258
TU1183262 other upstream 436155 11666987 ~ 11738777 (-) True G1038295
TU1183605 other upstream 1058692 12289524 ~ 12290472 (-) False G1038606
TU1183606 other upstream 1058692 12289524 ~ 12290472 (-) False G1038606
TU1183607 other upstream 1058692 12289524 ~ 12292538 (-) True G1038606

Expression Profile