RNA id: XR_005034873.1


Basic Information

Item Value
RNA id XR_005034873.1
length 2071
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110536975
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 11973329 ~ 12004830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCGTTTCtgacttggaattctgagttcaATAACCATTCAAAACGATTTTCCCAGTCTTGAGTTTATTTTTTTTCAGTTGCCAGTTGAATTGAACGCAGTGAAgtcggaagtcagagatttccaagttcccagttgtcttgaacgcggcAGTATCCTAGTCCCCAGTGGGAAGATTTTTATAaccataatgcaacacactttgaagACTTGACAAAAGTGATCCGCTCGAACGCGCCTAATGATTTAGGCTACATAAATGAATGAACAATTgctgatatttatttatttttttaccccttgcACGGTCAACAGGTTTGTCAATATTGTGAGAAAGCATTTCTGTCACTGTGTGAGCAGCGTTGACTCTCTCTTACTGAACCTTGTGCGCTACGCAGTTTGATAAAGCCTGCCTATGGTCATATAAAATAATGAACATAAAGAAGTGTTGGAGCGCCACCTGGAGAAATACTGCTTCGTCTTGCTTTTGGGTTGTCACTCGTTACCACAGCCACGAAATCAAGTGTATATCGTAAAAATTAATTATTACAAATAATGGTTtctggtcttaatttaaggttaggcataaggttagcagtttGGTTTAAAGTCTTATTTTAAGATAAAATGTAGAAGTTGGCGGGGGTTAGCCAATTAAGCCTTTGTagttgtggtaactagtgacgactaTCAACATGTGtggaaataacaacaacaacaacacggcGAGCCGGGAGCTCACCTACGATGGCTGTAATCTTTTCAGACAAACACCAGTGTTATCAACGCTAAATTGCAAAAGCAAAACTTACGATCTAAAGAGGATAACCCAGGACTGCGAGATGTTGTAGCCAGCTTCATCAGGCTTCTGGACAAGGTAACCTAAGGGACCAAAATTGAAATCAAGTCATGAGAGGATGAatgcagtgttgccaactcctcagtaaggaaagtagctattggctgtcctaactGACGTCAtcgcctaatttgcataatttgccatgtgcatgtaattgtgatggatgcTGTTGGCATAACGTCGTGGAGAGACAAAAGGAACGGTGCTGTTCTATCAGCTAGGCCTGCTGTATGGCGTCGTGGTGGAACATGACTAACACCCAGCGCTCTCTGGGTTATTACCTGGTTTCCCTGCTCATGTGGGCTCCCTTCATGAAGCACCCTTTGAAGGCTGTGCTGAAGGGGATCACCAACGATCCCATTGACTTCTCGAGTGACTGCCCCTAAAAACCAACTAATCCCTTCCAACGCGTTCAGAGCTGTTTTGAGACTGAAAATCCCTATACGGCTTGACCAACTATGGTTTGCATGCTCTTCCGAAGGACCCTATCATGCGAAATAGGTGGTTGGAGTTCGTTGGTTCCCAGTGcagtggtggtgagtataccGGTAGCTAGACCATAGACATCTGGTTATGTATGTTTGAAAAGTTGCATTCAAAAATACCTGGCTTGGTAAACTAGTAGGCTAATTCCCCAGCCAATCAGATACAGCTAGTAGAGTCATTTTGGTTGTGAAGTGCACTTGCAAAAAGCTTTGTCCTTTCTCtagaaaaaaaaaatgcaatttacCACTTGGCTGTCTATTATATCACCCTGTCACAGGCCCTCCCAGCCAACACCACCTCATCAGATTGCCCGTTGCAGTTGTTGGAGAGATGTACAGATGGCAGCAGAACATGCAGCATAGTGAAGACTTCACTGTGAGCATAACAATGAACGGATCAGTCAGCCAGCTGTTGGCAAGTATCCGGTTAGACAAACCTGTCATCGACAACAGCTTTCACAGGCTCATCATTTTGTACAAATACAGAAGGTAACCCACTTCATTACTTTGATACCCAGTTTGAAAACCCAGTAATGAAACATAATGTATATAAACTGGCATTATTTGTTACTTGTTTTCTACTTCTTAGATGCGTATAatgtgccttcagaatgtattcataccccttgacttattccacacactgtatatagactttctattgtgttattgactgtacgtttgtttattccatgtgtaactctgttgtttttgtcgcactgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1183428 lncRNA downstream 51831 11941194 ~ 11941523 (-) True G1038440
TU1183396 lncRNA downstream 100191 11891374 ~ 11893163 (-) False LOC110536972
TU1183397 lncRNA downstream 100191 11891374 ~ 11893163 (-) False LOC110536972
TU1183398 lncRNA downstream 100191 11891374 ~ 11893163 (-) True LOC110536972
TU1183335 lncRNA downstream 204592 11788222 ~ 11788762 (-) True G1038360
TU1183444 lncRNA upstream 407 12005237 ~ 12005560 (-) True G1038456
TU1183400 lncRNA upstream 14640 12019470 ~ 12020041 (-) False LOC110536978
TU1183403 lncRNA upstream 15502 12020332 ~ 12023826 (-) True LOC110536978
TU1183488 lncRNA upstream 70653 12075483 ~ 12075950 (-) True G1038500
TU1183520 lncRNA upstream 95293 12100123 ~ 12100626 (-) True G1038527
XR_002475536.2 mRNA downstream 15414 11973329 ~ 11977940 (-) False LOC110536975
XM_036936928.1 mRNA downstream 32147 11898082 ~ 11961207 (-) False LOC110536972
XM_036936927.1 mRNA downstream 32148 11891370 ~ 11961206 (-) False LOC110536972
XM_021622655.2 mRNA downstream 132071 11855774 ~ 11861283 (-) True LOC110536971
XM_021622653.2 mRNA downstream 132075 11855774 ~ 11861279 (-) False LOC110536971
XM_036936931.1 mRNA upstream 14607 12019437 ~ 12034884 (-) False LOC110536978
XM_036936932.1 mRNA upstream 14607 12019437 ~ 12034884 (-) False LOC110536978
XM_036936933.1 mRNA upstream 14607 12019437 ~ 12034884 (-) False LOC110536978
NM_001124386.1 mRNA upstream 140056 12144886 ~ 12149201 (-) True ambp
XM_036936937.1 mRNA upstream 160885 12165715 ~ 12192655 (-) False LOC110536982
TU1183262 other downstream 254577 11666987 ~ 11738777 (-) True G1038295
TU1183218 other downstream 377411 11606351 ~ 11615943 (-) True G1038258
TU1182137 other downstream 762522 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other downstream 762522 11213951 ~ 11230832 (-) True LOC110536956
TU1181957 other downstream 887034 11105935 ~ 11106320 (-) True G1037217
TU1183605 other upstream 284694 12289524 ~ 12290472 (-) False G1038606
TU1183606 other upstream 284694 12289524 ~ 12290472 (-) False G1038606
TU1183607 other upstream 284694 12289524 ~ 12292538 (-) True G1038606
TU1183992 other upstream 715671 12720501 ~ 12721154 (-) True G1038943
TU1184465 other upstream 1142828 13147658 ~ 13176443 (-) True G1039364

Expression Profile