RNA id: XM_036936931.1


Basic Information

Item Value
RNA id XM_036936931.1
length 3071
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110536978
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 12019437 ~ 12034884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGTTCCACACCACGTGGTACTTGAATAAAAGCATGGAGGCTGCTGTGTATTTGTGCTCTGATCCAAATATCACTTTTGCTAGTGCTTTGCCTTTCTTTGGAAGAACTTAGGCGATATCGATATTTTCCCAATTGATAGATTCAGCCTCGGGGTTTTGGGCGGGTCGAGACGGAGCAGCAGCAGCGATGGAGTGGTTCGGGACTGGAAACTCCCCTATGTTTCCCGAAGAAGAAGAGGGTTACAGTGCCTCTGCCTCTTCTGTGCCAAGTAGCTTTCACAGCTCATCACTGCAGGAGGTTGCCAGTGCAGAGTCCATGGTGTCCCTGTGCCAGaggcagcagcagtgtgtgaaGGCCTCTGTTTCCAGCTGGCAGTTAGTGGAGGCTCAGGACCAGCTGTGTGGGATGGAGCTGCACGGCTCCGAGAGCGTCGAGCAGGAGCGCGCTCGCGCTGTCGCCGGCCAATCAGAGCTCTCGCAGACTGAACATGAGTGGCGCCGGAAGGAGAGCATGCTGGGAGGGAGCAGGAGCCCCGTGCTCAGCGCTGACAGCAGCCGGGACATGTTCGACAAGAGTATTATTAATAGTAAAAACGTTGAATTGGAGGTTCACGACAAGAGCAAAACCTTTGTTCAGAAGTATGAAAAAGAATTGAGACATTTTGGCATGTTGCGGAGGTGGGATGACAGCCAGCGCTTCCTGTCTGACCTGCATCACCTCATCTGTGAGGAGACGGCCAACTACCTGATCCTCTGGTGCTTTAGACTTCAAGCCGAAGAGAAAGAGGCGTTGATGGAGCAGGTAGCTCACCAGGCTGTTGCTATGCAGTTTATCCTGGAGATGGCCAGCACCTCCCAGCAGGATCCCAGAGGCTGCTTCCGTCACTTCTTCCACAAAGCCAAAGCAGGACAAGAGGGGTACTTAAACGTCTTCCATGCTGAGCTAGAGGCCTTTAAGCAGAGAGTAAAAGAGTACACCGTCAAGTTCAAAGGAGAGACCCTCTCCAACGACACACCGCTCCAGAGCAGTACAGCACGCTGTCATCTGGATCCCAAAGAGGTTCTAGAATCTTTACCCCCAGAACTGAAGGCAGGGTTCCAGCTGCAAGACATGCAGATTCTCCAGAATGTTCTCCGCACCATGAATCCACAGGTGGCAGAGTACCATGTGAAGCGTTGTCTGGAGTCCGGCTTGTGGACAAACAAAGAAGGGAGACGGTCCAAGGAGGAAGTTAATCCAGAAACAGACGACCTGCGCATGATGGAGACATAACGACTGTGGTGCacgctccctccatctctcccataGGAATTGACACTCTCAATAGGAAAAGGGCTGAGCTCCCCACAGAGACTTATTTTTGTATGCAGCAGAATCTGCGCCTGAATGTGTCTTGCACTTTATATTTGTTCAAAACAATCTATTTAAAGAAGGCGAGTGGTAGGTATTTTGAGGCACTTACCTTACCTTTTCTCATATAGCTAGAGTATCTCTACTCATGTCATATCTTGATTGTTTTAGCAGAGTGAACCTTGAGTGAACCTTGCTTTGTAAGGAAGTCATCTTTACACATTAATTTACAAGAGCTACTTCAAACTTTTGAGAATTGTTTTTGTTTATATATTTTGGGGTATTCCTGTGACTCCGTTAATCAACCTTATGGGTGTGAAGAAGGGAGATAACAGTCCATCTACAGTAGGCTTCACAAGTAGGAagtctagcggttaagagcgttgggccagtaacagagaAATTGGCTGTTCTGCCCTCGACcaaagcagttaacccccaacaataACTACGGGCGCCAACGACATGGACGTCGATTTAAGGCGgctgcccccccccccgcaccGCTCTGATacagaggggttggattaaaaGCAGGAGACCCATTTCGGTTGAATGAATTGTTGggcaaatgactaggtatccccctttccttcctTTAGTAGGAGGGGAAAAGCCTGAGCATTTATAATCAAACTTGCTCTTGTCGTAAATAAAAGTGCACCATGTTTTGGTTGAAGAGGCCTAATCCTGGAGTCCTATTTCTGCAGTCTCTAACGTTCTGTCCAACACCGCTGAGCCAGTAGTGCATGTGGTTAAAACTGTCATAGACACGTGCAAACGCtctgggcccatattcacaaagcgtGAGTAGGAGTGCTAGTCTAAGGTCTGGTCCCCACCTCTAATTTATAATGGTTTAAAAGGTCTGCCCCCCTTTCTAATTCATAATAGTTTAAaagGTCTTCCCCCCTTATCTAATTCATAATGGTTTaaaaggtctctctctccccccctctaatTCATAATGGTTTaaaaggtctctctctccccccctctaatTCATAATGGTTTAAAAGGTCTGGGCCCCCCCACTTTAATTCATAATGGTTTTAAAGGTCTGCCCCCCCTATAATTCATAATGGTTTAAaaggtctcccccccccccccccccccccaccttctaaTTCATAATGGTTTAAAAGGTCTGGGGCCCCCCCTCTAATTCATAATGGTTTAAAAGGTCTGGGGCCCCCCCTCTAATTCATAATGGTTTAAAAAGctaaactgatcttagatcagcactcctattctgaCACTCTGGATGAGGGCCCTGTGCTCTTTCAGCTCCTGTGTGTCCAGTTTGTCATTAGGCCAATATTTAATGCCGATATACTACCATGGTGTAGCTATGACGACTCCACTATGCAAAGCAATGAGTTTGCTGTGATTACTTGTGTTACTGCTGGTCACTCCTCCTCAACCAACACTCATAAAATGTCTTGCTCTGTCCATCACAGAAAAATAAGCTTCTCAACATATCAATGTATGGCTGCTAAACTCAACTGCTCACATAATTGATTGTGACACTGGAAACAACCTGTAGAACTTCCTTTGGCTGCCAGAACGTGACAACATCCTGTACTAGTCTGTGCTCTGTTTGAAATAGAACCGCTTTGAAACAACTGTGCAGGGTAAATGGCTATAATACATTAGGTCTACCTGAACACATTTTAAACGTTCTGCAAAAGTCTAATGAAATAAATGAATTTAAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1183444 lncRNA downstream 13877 12005237 ~ 12005560 (-) True G1038456
TU1183413 lncRNA downstream 15173 12003412 ~ 12004264 (-) True LOC110536975
TU1183409 lncRNA downstream 25021 11993299 ~ 11994416 (-) False LOC110536975
TU1183428 lncRNA downstream 77914 11941194 ~ 11941523 (-) True G1038440
TU1183396 lncRNA downstream 126274 11891374 ~ 11893163 (-) False LOC110536972
TU1183488 lncRNA upstream 40599 12075483 ~ 12075950 (-) True G1038500
TU1183520 lncRNA upstream 65239 12100123 ~ 12100626 (-) True G1038527
TU1183524 lncRNA upstream 67484 12102368 ~ 12102678 (-) True G1038531
TU1183526 lncRNA upstream 78956 12113840 ~ 12114101 (-) True G1038533
TU1183530 lncRNA upstream 87056 12121940 ~ 12122166 (-) True G1038537
XR_002475537.2 mRNA downstream 14607 11973329 ~ 12004830 (-) False LOC110536975
XR_002475541.2 mRNA downstream 14607 11973329 ~ 12004830 (-) False LOC110536975
XR_005034872.1 mRNA downstream 14607 11973329 ~ 12004830 (-) False LOC110536975
XM_036936930.1 mRNA downstream 14607 11984733 ~ 12004830 (-) False LOC110536975
XR_002475542.2 mRNA downstream 14607 11993354 ~ 12004830 (-) False LOC110536975
NM_001124386.1 mRNA upstream 110002 12144886 ~ 12149201 (-) True ambp
XM_036936937.1 mRNA upstream 130831 12165715 ~ 12192655 (-) False LOC110536982
XM_036936936.1 mRNA upstream 130831 12165715 ~ 12195453 (-) True LOC110536982
XM_036936938.1 mRNA upstream 212908 12247792 ~ 12282813 (-) True LOC110536783
XM_036936940.1 mRNA upstream 468175 12503059 ~ 12522639 (-) True LOC110536785
TU1183262 other downstream 280660 11666987 ~ 11738777 (-) True G1038295
TU1183218 other downstream 403494 11606351 ~ 11615943 (-) True G1038258
TU1182137 other downstream 788605 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other downstream 788605 11213951 ~ 11230832 (-) True LOC110536956
TU1181957 other downstream 913117 11105935 ~ 11106320 (-) True G1037217
TU1183605 other upstream 254640 12289524 ~ 12290472 (-) False G1038606
TU1183606 other upstream 254640 12289524 ~ 12290472 (-) False G1038606
TU1183607 other upstream 254640 12289524 ~ 12292538 (-) True G1038606
TU1183992 other upstream 685617 12720501 ~ 12721154 (-) True G1038943
TU1184465 other upstream 1112774 13147658 ~ 13176443 (-) True G1039364

Expression Profile