RNA id: XM_036936936.1


Basic Information

Item Value
RNA id XM_036936936.1
length 7076
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110536982
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 12165715 ~ 12195453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGTCGGTGTCACAACCGGCTGGAATGAGGCGTGCACTCACTCGTCGAAAGAAGGACCGCATTTCCTTGATTGTGAAAGTTATGCTGTAGCAGGCTCCACCTCTATGGGAAGCAATTATAAACTATGGGTAATTTGATTGGTCCTAGCGCTAGTCAATCTTCGCTGCTTACACATAATACCGGTGGATACGGAGGACGGCTCAACTAAGAAAATGATAAGGTCATTCGAATTACTGTGGCGAGCGAGTTTATTGCTACAATGAAACTGAAAAAAATTGTACTGGCGATAGGAATGAACGGATGATTTCTATAGAGGCAAAGTCGAACCAAGGGGGCAGGCAAATTTGATATAAATACTCCGGAGGGGGGGGGCAATGCGCTGTTATCTGAGACCCTTGTGTCTGTCAATGTGCAAGTAGACGCCAGAGCGGTGGAAGGTTTTGCTAAACCAATCAAGGTGGAATTGTACAAAACGAGTTCCACGTCCGGTGTAATACGCACATTACTGTGTTTGTGGGGGACGTGAAACAAGGATGATGCGCCTGGCTTGCTGCAccgtcctcctcttcctgctccgtCTCTTGGTGGGCCTGCCCTGGTTCCAGGTCCTCCCCTCCATCCTCATCTTCTACCTGGGCTCTGGAGGCTGGAAGTTCGTACTCATTTTCGCCAAAACCATCAGAAGAGATTTACAtgCGGCAGGCGTCCTCCTCAAGGTGAAGTCAAACGTCAATCGTCACCTGAAGGAACGAAACACCCTCCCTAAGATCTTCGCCGAGACGGTGCGTCGCCATGGGGACAAGACTGCGCTCATTTTCGAGGGCACAGGCGAGAAGTGGTCCTTCCGGCAGCTGGATGAGTACTCCAACCGTGTAGCCAACCTGCTGCTCCAGAGGGGCTTCGTGGAAGGGGATGTGGTGGCTCTCTTCATGGAGAACCGGTCCCAGTACGTGGGCCTCTGGCTGGGCATGGCCAAGATAGGAGTGGAGGCTGCTCTGATCAACTTTAACCTGCGGCTGGAGGCCCTGGTGCACTGCGTCACCATCTCAAACGCTAAGGCTGTGGTGTTCGGCAGCGAGCTGACCGAGGCTGTGTGTGAGGTCCACAGTTCCATGGGGAAGACAGTACAGATGCTGTGTTCAGGGGACTGGGACCCCAAACGTGTCCCTGCAGGGACAGAGTGCCTGGAGCCTCTACTGGATGCCGCCCCGACCCACCTGCCCATCCGCCCAGACCGCTGCTTCACTGATCGTCTGTTCTACATCTACACATCTGGGACCACCGGGATGCCCAAAGCTGCCATCGTGGTGCACAGCAGGTACTACCGCATGGCAGCCTTGGTATACTACGGTTTCGGTATGACGTCTGATGATGTGTTGTACGATTGCCTTCCACTCTACCACTCCGCAGGAAACATTGTTGGCGTGGGGCAGTGCCTGATCCACGGCATGACAGTGGTCATCAAGAAGAAGTTCTCTGCCTCCCGGTTCTGGGACGACTGTGCCAAGTACaactgcacgATTGTCCAGTACATCGGGGAGATATGCCGGTACCTGTTGAACCAGCCGGTAAAGGACATAGAGGGTAAACACAAGGTCCGTATGGCGCTCGGTAACGGCCTGCGCCAGTCCATCTGGGAAGAGTTCACCTCTCGCTTCAACGTACCACAGATAGCAGAGTTCTACGGAGCCACAGAGTGCAACTGTAGCCTGGGAAACTTCGACAACATGACAGGAGCATGTGGCTTCAACAGCCagatcctccccttcatctaccccATCAGACTGGTGAAGGTAGATGAGGAGACCATGGAGCTCATCAGAGGCCCCGATGGCGTCTGCATCCCCTGTGGGCCTGgtgaGCCCGGCCAGTTGGTAGGCAGGATCAATCAGAAAGACCCCCTGAGAAGGTTTGACGGCTACGTGAACGAAGGAGCCAACAGCAAGAAGACTGCTAACAGTGTCTTCAAGAAGGGAGACACTGCCTATCTCTCAGGCGACGTCCTAGTCATGGACCAGTATGGTTACATGTACTTTAAGGATCGTACAGGGGACACGTTCCGTTGGAAGGGAGAGAACGTGTCGACCACAGAGGTGGAGGGAACACTGAGCCGTCTGCTGGACATGATGGACGTGGTAGTCTACGGAGTGGAGGTGCCAGGGGCTGAGGGGAAGGCTGGGATGGCCGCCGTAGCAGATCCAGAGAGATCTACAGACCTGGAGAAGTTTGGGAAGGATCTAGAGAAAGCTCTGCCACCCTACGCACGACCCGTCTTCCTACGCTTCCTCAAAGAGGTCAACAAGACAGGCACCTATAAGTTCCAGAAGACAGACATGCGGCAGGACGGTTTTGACCCCAGCATGGTATCAGACAAACTGTACTTCCTGGACCCCACCAGGGGGCGCTATGTAGAGCTGCATCAGGAGCTCTACAGCAGCATCATCTCAGGGAAGCAGAAACTGTAACTGTGAGATCTGATCACTCTtaccacccccccccaaaaaaagaattATCACCcccatccacccacacacacacacacaccctattccTGAAGTCACTCTCCCAACCCCAGAGAAACTCTTAACTCTTACAACccacctctctgctctctctaagCCCACACCCCTCGTTACTTCAGTGACCACAGTGAGGGGCAGCTGGCTCATCCAGGTCACATGACAAGCCAATCTGACACCATATCCCACGATAGACCTAGAGCGACCTTTGACCTCTAAAGGCACCCAAGAGCTTGACCTTGAACTTGACCTGCCCTGGAGCTATAGGAACGCTCGCTGGAAGGACACAGCTCGCTGGCTGAGAGGGGTGTGTGGCATGTCCAGAATGCAAAAACATAGTAACTTACTCCAAATGTAAGAGTCCTAGCTATAGGAACTTGACACAGTGAAAGAACTTGAATTGATTGAAGGAAACAGTCCTGTTGGTCTGTCGGTTTGTCCGTCTCATGTTGAGGTCATTCCCTCATAGGTCCAACCTGCACACTGCCCAGTCAGTGACCAGTGGCTTCTGTTGTGACACAAAATGGCCGATTTTGGTTTTAGTGGTGTTGACTCGGCACATCCATGttagacatacagtacagctaACCTGAAACTGATGGATTTAAGTGCAATAGGGCTCCAGCAGTGGCAGTTTACAGCTGTGAAGAAGCTCTCTATTATATTAAATGTCTGCATTATaccaaatatatttaatttgtagAATAGTCTTTACACGTTTTAAAACAAAAGGATGATTGTATGTTCAAGTTCCTGATAATATTCAAATTCTAATCATGTTTTGCTATATCCACAATTGTGCTCGGCTTTCTCCTGACCTCACCCACTAGGGGTGCTCCTCCTAGTCTTCAACTATAGAATCTACAGACCAACTCCCAGCTGCTGGAGCACCAATAACTCTTACAGTTTCAAACCTGGTTCTGAATGTTCTGATTCTGGGTAGAAGATTCAGATTCTGAATGTTCTGATTCTGGGtaaattcgttttttttttgtctgtgtcAACATTGTGCAGGTTGGGCCCAATGGATTGGCTTCGTCTTGTATGGCACAGTAGACATTTTAAAGCTTGCCGAAGAGCGTGCTGAAGTGAAAAGCACTAACCTCCTCTGTCTCTGAGGTGTTGTTGAGGATAATACTCTGGTGCTACTGACAGAAGGAGACTCTGACTCTGGTGCAGCAAGCCAAATGATCTAAACCAGGcctttccaaccctgttcctggagagttaccatcCTGTAGGGTTTCACTCCAACcataatctagcacacctgattctaataattgataagctgaatcaggtcAGTTAAAACTGGGGTTGGaacaaaaacctacaggagggtagctctccaggaacagggttggagagatcTAATTTAAAGATGGTCCTTGCTcgaagggggaagaggagaggaaaagagaagagagagagaatattatttttgttattgtttGTTCTTCTACTTTCTTGTTTCATCTTCTCAGCAGCATGAATGATCAACATAGAGTACTGTGCCTTTACTGTGAGTTTACCCTCTCAGATTCACAGACCCTGTTCCCATCACCCCCTACCCTAACACTTCACTCCCTACAGTCCCCATCACCCCCTACCCTAACACTTCACTCCCTACAGTCCCTACCCTAACACTTCACTCCCTACAGTCCCATCACCCCCTACTGTCCCATAGCACCCtactccctcactctcctcaccCCCTACTGTCCCATAGCACCCTACTCCCTCACTCTCCTATCACTCCCTTGTCTGTCCTCTGTCCCTATCATCAGGTACTAACCCACATTTCCCATTCACTTTTATTCAGCACCCCAATTCTGTTGTACCCTAACCCATGATCACTCCTGTTAGGCATGTCTCCCAACCTCTCACCCAGTCTCCCAACCTCTCATCCAGTCTCTCACCCAGTCCCTCAAACGCTCACCCTTCCCAGGCACCTCTGTTTGATCCTTGCTTCTCTTGTTATGGCTAGACATTCCTCTCGGTCTGTCATGATGTTATTCCCTCAGCTCCGAGGACATGACGTGTGATTAACGACAGTCACCTCCCCAGCTCTCGTACCGTCGGCAGTACTCTACGTGATGGGTCACCATGTCCTCTCAAAACAAACAAATTATGAGCCGGTTTCGTCAACCAAATATCCTGTCTGTGTGAAATCGAAGGTGGAGACCGAGGCACAATGATTCTCCTTGTCTTCTGTCTGGTGTGTCTCTTGTCGTGTTACACGGGCACACCTCGctgatgaggaagaggaagtgaCAACATAGTTCTCCAGCTCCACCCATCAGTATCAGTGTATTTATTACTAGTGATGATCGTTTCATTTGTCAAATGTTTGAGGAAGAAAAATGTTtaattaaggggggggggggggggggggggtaaatgttGGCAAAGAAGAGTATATACATTTTGGGGTTATATGAGAATGCTGCTTTGACTCTAGTGATCCTGGGGTGTCAAATGGTAGTATGACCACGAGGTGGCGCCTGACTGGGCAGCCCCAGAGGAGTCCAAATGGGCATTGGGCAATATTCTGAAgtggcttcctttccttgtctcctttcctccatctgcactgatctgaaaggAGTGGAGGTGAAAAATAGCCATATTGTTTACACCTATGCTGTTGAAgcagaggagacgaggagaggaatcTGTTTTAGACTATTGAGATTCACCTCCTCTCTACCCTAGATGTTTCCATTCCCACTTTTTCtcattttaaattattattttataaagTATTAGTCATTCTTGATCTGATTGTGCATTGACTGTGTCGCGGCTATGCATTGCATTTGTTAGTTATTTTCTGTGTGTGAAATCAAAGCTTTGATGTCTCAGGGTTCTGGAAGTGAGTGAAGGGTTTCCGTTGGTTTATATGTCTACCTGTTTGACTGTAACCAGAACCCAAACCTATGACGGCACCAGCCCACTGTCTTATGACACTGAGTAGAGACAGACTGTCGTCTGTCACAGGCTCTTTGAGGTTATGTGTCTTTGGgacggtttcctggacacagattaagcctagtcctggactgaaACATGTCTCCATTGAATATGCTTTTTAGGGAAACCAACCCCCTATGTCTGTCAAACCAATGGGAGCTATAGTAGTGTGAGAGAGTGACAGGGTGTTGGTCACATCTTTAACCAGAGGGAGGCTGTGTTTCCCACAAAAATCCTCTTTGCTGCTGCCTACTGCTACCCATAGAGATGGATaaaggactcatctttgtatctgcgCCATTATAATGCCTATGGCAGCATGGAGTAGTCTCCATTAGGAAGTAGTCAATTTTCTTATTCACGATTGGccgatccctcctgatgacccggttggacatgactccaacagggtcTCCAGGATGGCTCAGTCAATaaagttggaagtcccacccagttgactacattcAAATTGTGGAAGCcttcaatggcgctgcccatgctaacatggccttttggccactagaggcctctatcattctctagtacagtggtcaccaaccttttctgagtcaagatcactttctgattCAAAATGCAAGCTGAGATTTACCactcatatttattttttaaatgtaagcctatgcaacattaaccaattaaaaactgTTCTGTAGTAATGAGGTTTGCAGTAGGTTATGGGCCGAAGACACTATCACTGTATATTGGCTACGCTTGACTTaccctgccaatgttgttcttctcagaccattttgaaattctatattttttaaatgtggtATATGATAATTGGTCATTTGTAATTGTTGTATTCATTGTGAGGCACAGCTCAGGCTcatggcctgcatctgatggtcagtctgaggtgAGAGTGACACAGTCCAGCTGAAACTCAAGTAGCACTGCATTATTTCTGTCTCATGCACCAATttatgttgttactcctatgaccagagaaagtgaaatattccttgatattaaaaaagacaagctgctaataataacaacgcaaGCTTATTGAAACACTTTGCTAtgctcattcattacagctgcagtacAGCTGcatgttttgaaatctcacagatGGCTCAGATCACTGTGCAGTCATGGTGATCTcagctatctgattggccagtggtTGGCCTATAGGTGcccttgatttgctctctgggctgGCCGGGTAGGCGGAGTattaccttcagacacatgaaatggttaaaAACACTTGGCCTTCCCAgcgctagggctgctgaatcaagtgcacctcccGCCAACAGCACTAAATAAAACCAAACAATAGGAACgcaaggctttatcgttgtttttttttaaccgaaatatttggtgatcgactaggaatgccttggagatcgaatTGTCCATCacgatcgaccggttggtgaccactgctctagtgCTACCATACCAGTGAACCTTCATTCCATAAGAGTAACCATTATGTCCCTAAGTGTATTAAAGAATGTCTGATGTATTTATAAAATCAATGCATTGCTCTTCTATAGTACTGGGATTATGGCTAATGAATAAAACAGATTGATGAATG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08745 SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1183518 lncRNA downstream 22885 12140405 ~ 12142830 (-) True G1038525
TU1183538 lncRNA downstream 32775 12132620 ~ 12132940 (-) True G1038545
TU1183537 lncRNA downstream 33745 12131770 ~ 12131970 (-) True G1038544
TU1183530 lncRNA downstream 43549 12121940 ~ 12122166 (-) True G1038537
TU1183526 lncRNA downstream 51614 12113840 ~ 12114101 (-) True G1038533
TU1183558 lncRNA upstream 6861 12202314 ~ 12231459 (-) True G1038564
TU1183666 lncRNA upstream 182132 12377585 ~ 12395184 (-) True G1038657
TU1183680 lncRNA upstream 206577 12402030 ~ 12408761 (-) False G1038667
TU1183679 lncRNA upstream 207684 12403137 ~ 12408761 (-) True G1038667
TU1183724 lncRNA upstream 266987 12462440 ~ 12546806 (-) True G1038703
NM_001124386.1 mRNA downstream 16514 12144886 ~ 12149201 (-) True ambp
XM_036936931.1 mRNA downstream 130831 12019437 ~ 12034884 (-) False LOC110536978
XM_036936932.1 mRNA downstream 130831 12019437 ~ 12034884 (-) False LOC110536978
XM_036936933.1 mRNA downstream 130831 12019437 ~ 12034884 (-) False LOC110536978
XR_005034874.1 mRNA downstream 160885 11993354 ~ 12004830 (-) False LOC110536975
XM_036936938.1 mRNA upstream 52339 12247792 ~ 12282813 (-) True LOC110536783
XM_036936940.1 mRNA upstream 307606 12503059 ~ 12522639 (-) True LOC110536785
XM_036937594.1 mRNA upstream 351863 12547316 ~ 12549945 (-) True LOC118937673
XM_036936941.1 mRNA upstream 445474 12640927 ~ 12758875 (-) False LOC110536786
XM_036936942.1 mRNA upstream 448001 12643454 ~ 12709985 (-) False LOC110536786
TU1183262 other downstream 426938 11666987 ~ 11738777 (-) True G1038295
TU1183218 other downstream 549772 11606351 ~ 11615943 (-) True G1038258
TU1182137 other downstream 934883 11213951 ~ 11230832 (-) False LOC110536956
TU1182138 other downstream 934883 11213951 ~ 11230832 (-) True LOC110536956
TU1181957 other downstream 1059395 11105935 ~ 11106320 (-) True G1037217
TU1183605 other upstream 94071 12289524 ~ 12290472 (-) False G1038606
TU1183606 other upstream 94071 12289524 ~ 12290472 (-) False G1038606
TU1183607 other upstream 94071 12289524 ~ 12292538 (-) True G1038606
TU1183992 other upstream 525048 12720501 ~ 12721154 (-) True G1038943
TU1184465 other upstream 952205 13147658 ~ 13176443 (-) True G1039364

Expression Profile