RNA id: XM_021622668.2


Basic Information

Item Value
RNA id XM_021622668.2
length 2484
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110536986
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13321118 ~ 13324415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGAGGAATAATTACTTCATGATCTGAGGATTAAATGAGAGCCACATGAAGGTGGAACAATTTTAGAAACTCAAGCGCATATCACACATATCGCTGGAATGACATAATATTAACGTTAGTGTTCTCATCACCCATCTGAGGGGACCAAGGCATTTCAGCATGTGCTACTATCAAGCGCTCCTGCGCACAATAAACGAAGTGCGTGCGTTTGGAACGCCCAGGAAACAGGAAGTGATCCGCAAGCGACTCTCTTTTTTTGTGAATGAGCGGTGCTCGCTTGATGATGCTTCAGAGATGCGGAGATGATTACAGACATTTGTCAGCCTACACAATTATAGACAACATATAATTCGTCACCCACCCTAGGCTACGTACTGTATTCAGGAGAAGGAAGAAGAGTAGACTAGGGACTCTACTTCATTACTCATATCAGagagagagaagagcaccACCATGTCATCTTCATTCTCAGACACACTCCAGTTCCGTTTCTCCAGCCCCGTCCACGATGATTCCATCCTGCAAAAGATGAGCCTGCTGAGAGAGGACCGACGCTTCTGTGACATCACCCTCATCCTCGGATCAGGGTCGTTCCGCTTCCCGGGTCACCGGGTGGTACTGGCGGCCTCCTCTGCCTTCCTCCGGGACCAGTTCCTGCTGCATGAGGGGAGCCGGGAGCTGCTGGTGACTGTGGTGCCCAGTGCGGAGGTGGGCCGTCGGCTGCTCCTGTCCTGTTACACAGGCCACCTGGAGGTCCCTCTGAGGGAGCTGGTCAGCTATCTGACGGCAGCGAGCGCACTGCAGATGAGCCACGTGGTGGAGAGGTGTGCCCAGGCCGTCTCTCAGTACCTGGACCCCACCCTTGCCCACCTGAAGCTGGAGAGGAGCCCAGAGACCGAGGGAACCCCTCTACCACCACCAGACAGCGTTAAACCCCAACCCAGCTCAGCAAGTCTGGACGAGGGGGAGATGgcgggggagatggagggggagaccCAGGAGGACCCAGAGGACAGGGACCACAGCCTGACCTCAGAAGACACTATGGACAGTGTCCACATGGTACACACTAACAGCACGTACCCTTACAGCCCGTATCCTTACCCGACGGGCGCTCACAGACGCAAGCAGCGCCCGCCCACGCCATGCAGAGAGTATAGGAAGAGGACCTTCCCCCCAGCAGGAAGTCCTGCCCACAGCAGTTCAGGATTGGCTGACAGCTCCCAGGACCAGGAAGTGGACAGGGACTCTGGAGAGGACATATACATGCTTGCTGCTCGTCATATGCAGGGCGTTGGGGGCGGGTCTCCCGAGTCCTCCTTTAGAGTTCTGACGGGGGCAGAGTTTTCAGGACGGGGACAGGAGATGCTCCTCCAGAGACCCTACCTGTGCAGGAAGTGTGACCGAGGGTTCCACCACCTGGACAGCTACGTGGGACACCTAAAGGAACACAGGCTCTACCCGTGTCTTctctgtgggaagagcttcagccAGAAAAGCAACCTGACCCGACACATCAGGGTTCACACAGGGGTCAAGCCTTTCCAGTGCCTGCTTTGCCACAAGACCTTTTCCCAGAAGGCCACGCTGCAAGACCACCTTAACCTCCACACAGGGGACAAGCCACACAAGTGCAACTACTGCGCCATCCACTTCGCACACAAACCAGGCCTCCGGCGCCACCTCAAGGACATCCATGGCAAGAGCAGCCTTCAGAACATGTTTGAGGAGGTGGTGTGAGCCTGGGAGCTGCTGGACTTCTGCAGCAAGAGACTTCTGAGTTAAGCATACCAGTGCCTAAATGAAAACTACAAAGAATTTGAACAACAAAAAATTCAAACTACAGAGAATTAGAACTACAAAGAATTTAAACTACAGAGAATTAGAACTACAAAGAATTAAAACTACATATAATTAGAACTACAAATAATTAAAACTACAAATAATTTGAACTACAAAGAATTAGAACTACAAACAATTTAAACTAAAAATAATTACAACTACAAAGACAAGGAGGAAACTAGTGTAAATGTATTGCACTCAATGTGTACTCAATATGCCAGTATATATTCAACTTGTCTGCCTCTTTAATGATGTAGCGAGAGTTTTAGCACAGACCCATGTCTAAATGAAAACTATGTAGAAGAACAGGCCAGGAGGGAGAAGTAGACTAAACTAGAATGGATTGAAAAGATATTGAAATGACCAACTGAAGATGATCTTCCAGTAGTTTGCCTCTTTCCTAATGTGAtgtttttgcactttattttctCCCCCCATCCAGAGACTCTAATGAGTGTTTTGATGGACTAGCACAGGAACATACAGAATCAGTCAACAAACTGTAGCTACATCActgctatttatatttttgtgcaTTAGAGTGTGTacccacaagtgtgtgtgtgtgtattgtgtgtgtgtgtgtgtgtgtgtattgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtgtgtgtgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1184536 lncRNA downstream 46733 13274150 ~ 13274385 (-) True G1039426
TU1184532 lncRNA downstream 47971 13272904 ~ 13273147 (-) True G1039422
TU1184341 lncRNA downstream 83484 13236131 ~ 13237634 (-) True G1039254
TU1184494 lncRNA downstream 91284 13229564 ~ 13229834 (-) True G1039389
TU1184477 lncRNA downstream 147545 13169169 ~ 13173573 (-) True G1039372
TU1184634 lncRNA upstream 22344 13346759 ~ 13348599 (-) False G1039501
TU1184633 lncRNA upstream 22451 13346866 ~ 13348599 (-) True G1039501
TU1185001 lncRNA upstream 169764 13494179 ~ 13494479 (-) True G1039824
TU1185029 lncRNA upstream 195615 13520030 ~ 13520304 (-) True G1039843
TU1185033 lncRNA upstream 199279 13523694 ~ 13523938 (-) True G1039846
XM_036936956.1 mRNA downstream 2172 13275169 ~ 13318946 (-) False LOC110536789
XM_036936958.1 mRNA downstream 2172 13275169 ~ 13318946 (-) True LOC110536789
XM_036936957.1 mRNA downstream 6109 13275169 ~ 13315009 (-) False LOC110536789
XM_036936954.1 mRNA downstream 65377 13081400 ~ 13255741 (-) True LOC110536788
XM_036936955.1 mRNA downstream 65378 13081400 ~ 13255740 (-) False LOC110536788
XM_036936959.1 mRNA upstream 11386 13335801 ~ 13354661 (-) True LOC110536988
XM_021622670.2 mRNA upstream 93799 13418214 ~ 13422990 (-) True LOC110536990
XM_036936964.1 mRNA upstream 118101 13442516 ~ 13464525 (-) False LOC110536992
XM_036936961.1 mRNA upstream 118101 13442516 ~ 13466878 (-) False LOC110536992
XM_036936962.1 mRNA upstream 118101 13442516 ~ 13466878 (-) False LOC110536992
TU1184465 other downstream 144675 13147658 ~ 13176443 (-) True G1039364
TU1184467 other downstream 168811 13151021 ~ 13152307 (-) True G1039366
TU1183992 other downstream 599964 12720501 ~ 12721154 (-) True G1038943
TU1183607 other downstream 1028580 12289524 ~ 12292538 (-) True G1038606
TU1183605 other downstream 1030646 12289524 ~ 12290472 (-) False G1038606
TU1184637 other upstream 30885 13355300 ~ 13355795 (-) True G1039504
TU1185574 other upstream 854243 14178658 ~ 14180141 (-) True G1040300
TU1185711 other upstream 983185 14307600 ~ 14311052 (-) True G1040432
TU1187996 other upstream 2779748 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 3000548 16324963 ~ 16328114 (-) False LOC110537059

Expression Profile