RNA id: XR_005034878.1


Basic Information

Item Value
RNA id XR_005034878.1
length 3646
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110536992
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13442516 ~ 13466878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTGGTACTACTAGAGTATGAGATTTCCATCGCTATTTACCACTCCTCATCAATGTTGTGCACAGTAGCTCTGTCCTCCAATGAGGTTTTAATGGAATACCACTCCTCGTCAATGTTGTGCACAGTAGCTCTGTCCTCCAATGAGGTTTTAATGGAATACCACTCCTCGTCAATGTTGTGCACAGTAGCTCTGTCCTCAATGAGGTTTTAATGGAATACCACTCCTCGTCAATGTTGTGCACAGTAGCTCTGTCCTCAATGAGGTTTTAATGTAATACCAGTCCTCAGTATAGTCTCGTCAAAAAACGCGAATTTGATTTTCTTCAATCACGAAACGAGTCACTTGATATCCCATTTTTGTGCTGCCTCACTGCACTTTCATTTAAATGTGTTGCAGGCAGCTGAAATGTAGGTGTCTGTTTGATGCTCATGTGAATGGCGCGTGATAACTCTGCCTGACGCCTGAATGGTAAGAAACGGACATGATTCATTTAGCGATCAAGACCTGTGAGATCATTTCATTCAAACGTACTGAATTACCAGACTGGATCAGTTATTAGGCTTTgcttttaaaaaatacaaaacaaatgtaCAGTGAAATTATAGCTAAACCCTGATGATCGAAACAGCTTTGGTAACATCTTAAACTCTTGGTGCTCATTTTGAACGCCTTCATTGCGGTCCATGACAGTGGCAGATGTACCGCCAATATTCCAGATGCGCGCTGGTCTCAAACTGGTCAACCTTGGTCTGTATATTGTCCTGATTATCGATCATTTCAAGCATGTATACATTAACTATAAGGCTAGTTGCTGCTTGATGCTGCAGGGCTGTGTTCCATTTAAGTTGTCTTTTTCATAGCTAAACAAAGCATCTACAGATTCGCCCTCGATATATTATTAGATTATTGGATTAAAAAGCCTATATATTTGGAGTGAGAATGAGATGTCATGTCTATTTATTTTGTGTCAAATTTGCAATAGATCCTCTTGCAGAATCAAACATGTACGTTTAGTTTAATCTTTTTCTAATCAGCGATAGTAAATGAACCCCTATGATAACAATAATAATCAAAAAAGCAACTAATTTAATAATAAATGTATGTCTCGTTTGAAATCTTATGTCTATTTAGTCTCACAAACTCCAAGAATGCAATATAATAAATGTATAACATGAATAATTAAACCTTAACTATTTACGGTGCATAATTGTGTTTTTAATTTagcaaaatgaaaaacaatgATTCGATGAAGTGCTATGTTTCTCAAGACTATCCACTTTTAAATAAGTTTACAacaaatatttaattaaataatCTCCAGACAGACATATGGATTACTTGATCTTGTGATCAAGGGTCATACATGTATTTCATTCATATTGTTTATGTTTGGGTGTGATTTGATGTCAACTTTGTAAAATACTACAAAGTATATATAgcctaactatatatatatatatatatattatatataagaTTACTTATATATTGTGAAATTCTAACATAATAGGTCGAAATAATACAAATCAACACCTACATAGTTTTTTCAACTAACCCTAAATAAAAAAGCCTGAATCAACATTATCCAGTGTCAGACTTACTTTCATTTTTAAATTGGTTATTTCTTACTAACAAAAATTGACAATTGAGGAAAAAAAGCTCCATCATAGCAGTGCTCTATCAGAAAGTTCGTGTACATGAGCCGTATAGCCTATACCTTTGCATGATACAACAAGTTTACCCTCCCCCTCCAAACAAGGGGCGCAACTAAACTTTCACTTCAGATGAGTTGCGCTTGGAGAGACGGTACCCTGCCTTGCTCTAGTTGTCTCGCGTTCTTGCCGATCTGGCGCAAACCTGCCAACCCATCCACTTCCTGTAGACAGCAAGTCCATCCCTAACGGAGTAAAAACAAAGAGGAAGGAATAATTTTACTAAGTGTTCTAAATAACGCGTTCTGAAGAGCAATCTCCACTTGCCGGTCCGTCCGCAACACCCAAGAGCTCCTTCATATAGGTGGGCTAGAACAACGTCTTATGCTTTATATCGCGTGTGTGCTGGGAGGCCGTTGCGTCGATCGTTGTGTAGAAGGAAAACACGCTGTGGGTGCAACATAGAAGTGTATTAACCCCGAAGATCTATGGCACGGATGATACCATTGACGCTCAACTTTTTTGCATGAAAGAGAAATCAGTTCAAAGCGCTGAGTTTGGGAAGCGAACTCAACCTACGTTAAGCTATATCAGAATACCAAGTGCTTTCATGTATTGGAAAAATGAGGTCTTGGCCCCTCTACCAGAGGGAGATCAGTTTTTATCCGAAGGAATTCCCGCAAAACAGGTCATTTCTCCAGGAATGCAGCAGAGTGCACCGGGTGCCTCGCGCTGTGTGGAAGCCGAACACGTCATGTCTCACTCTGACGGGGAATCCCACCGATCGAACATGGAGAATGGGGAATCCCACCGATCGAACACGCGCTCCTCCCCGAGTCCCCCCTCTACTCCATCTATCTGCTCGCCTACCTCCACCGCCTCCTCGGTGCTGTCCACCCGGAAGAACGTGTGCGCGAGCTGCGGTTTGGAGATCCTGGACAGATACCTTCTCAAGGTGAATAACTTGATCTGGCACGTGAGGTGTCTGGAGTGTTCTGTCTGCCGGACGTCGTTGCGTCAACACAACAGCTGTTACATcaaaaacaaagagatcttctgtaaAATGGATTATTTCAGtaggTTCGGTACAAAGTGTGACCAGTGTGGACGCCAGATATATTCCAGCGACTGGGTGCGTCGGGCCAAGGGCAATACCTACCACTTGGCGTGCTTTGCCTGCTTCTCCTGCAAGAGGCAGCTGTCCACGGGGGAGGAGTTTGGCCTGGTGGAGGAGAAGGTGCTCTGCAGGATCCACTACGACACCATGGTGGAGAACCTCAAACGGGCTGCCGAGAGTGGTAGTGGCATCACTCTGGAGGGGGCAGTGCCGTCAGAGCAGGACAGCCAACCCAAGCCTGCCAAGAGAGCACGCACCTCCTTCACTGCTGAGCAGCTGCAGGTGATGCAGACTCAGTTTGCGCAGGACAACAACCCCGATGCACAGACCCTGCAGAAACTGGCAGACATGACTGGTCTAAGCAGGAGAGTCATACAGAGCAAGACACAAAAAGCATACCCCCCAGCACAGCGGACCCCCACAAGGCCACCCCCAGTCCCGGATGCACCCCTCACTGCCTGACGACCTGCATTACTCCCCCTTTGGAAGTTCTGAGAGGGCGCGCATGGTGGCCCTGCACGGATACATCGACAGTGAGTGTTACATAGGCCACCCATTCTCTGTCCTAGCGACACAGAGCCTGAACCCCCATCAAGCAATGTCGCTGTCCCAGCTACCCCTCAGCCGCTAACTAACGGATGCTGCCGCCATCACCCCTGACCTCCTATCAGCAACCTCCGTTTGCCGACTCGACCCCAGAGGTCAAACATGAAGACTTACGGAGAGGATCAAGATTCAAGATGCCTAAGAgaccgaggcagagagagaccgaagcagagagagaccgaggcagagagagaccgaggcagagagagaccgaggcagagagagaccgaggcagagagagaccgaggcagagacacagacagacgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1184634 lncRNA downstream 93917 13346759 ~ 13348599 (-) False G1039501
TU1184633 lncRNA downstream 93917 13346866 ~ 13348599 (-) True G1039501
TU1184536 lncRNA downstream 168131 13274150 ~ 13274385 (-) True G1039426
TU1184532 lncRNA downstream 169369 13272904 ~ 13273147 (-) True G1039422
TU1184341 lncRNA downstream 204882 13236131 ~ 13237634 (-) True G1039254
TU1185001 lncRNA upstream 27301 13494179 ~ 13494479 (-) True G1039824
TU1185029 lncRNA upstream 53152 13520030 ~ 13520304 (-) True G1039843
TU1185033 lncRNA upstream 56816 13523694 ~ 13523938 (-) True G1039846
TU1185035 lncRNA upstream 58047 13524925 ~ 13525141 (-) True G1039848
TU1185039 lncRNA upstream 62706 13529584 ~ 13534446 (-) True G1039851
XM_021622670.2 mRNA downstream 19526 13418214 ~ 13422990 (-) True LOC110536990
XM_036936959.1 mRNA downstream 87855 13335801 ~ 13354661 (-) True LOC110536988
XM_021622668.2 mRNA downstream 118101 13321118 ~ 13324415 (-) False LOC110536986
XM_036936956.1 mRNA downstream 123570 13275169 ~ 13318946 (-) False LOC110536789
XM_036936973.1 mRNA upstream 154 13467032 ~ 13497148 (-) False LOC118937626
XM_036936972.1 mRNA upstream 154 13467032 ~ 13497183 (-) False LOC118937626
XM_036936966.1 mRNA upstream 154 13467032 ~ 13497190 (-) False LOC118937626
XR_005034880.1 mRNA upstream 154 13467032 ~ 13497191 (-) False LOC118937626
XM_036936967.1 mRNA upstream 154 13467032 ~ 13497192 (-) False LOC118937626
TU1184637 other downstream 86721 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 119800 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 266073 13147658 ~ 13176443 (-) True G1039364
TU1184467 other downstream 290209 13151021 ~ 13152307 (-) True G1039366
TU1183992 other downstream 721362 12720501 ~ 12721154 (-) True G1038943
TU1185574 other upstream 711780 14178658 ~ 14180141 (-) True G1040300
TU1185711 other upstream 840722 14307600 ~ 14311052 (-) True G1040432
TU1187996 other upstream 2637285 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 2858085 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 2858085 16324963 ~ 16328114 (-) True LOC110537059

Expression Profile