RNA id: XR_005034880.1


Basic Information

Item Value
RNA id XR_005034880.1
length 3231
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC118937626
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13467032 ~ 13497193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTTACACTGGACTAAGGACTTTTAATTCAGAACAACAAAGAACAAATGCAGTCAGAATACTTCCCTTTAATTAAAGGGCACGCCATCTTTCTACTCGCCTAAGGGCACTATTTGGCTCCCAtattatttaaccttaatttgaCTAGGCACTTGCctagtcagttaattaagaacaaattcggatttacaatgacggcctacttcaGTTGGCTATATATCAATAATATCACTCATGCATGTTACACAATGTTAAACAAAAGCAAGCTAGCTAATATGATAGCAATGCCTCCATAGTCTTTGATGATATTTaactaaagctagctagctaaacggtGGTGGCATTTAGCTATAGAAAGGTCGTTGCGTACGCAGTCGAACTAAAACATAAATAATGGATCAATGCAGGAGAATATTTGGGATTGGAACATGTTTACATTGTAACTACTAGCTATATCAAGAACAATTGTCCTACATTTTAAAGTAGTTACTTACTTATATCTTGTCAAATGTGTCTACTTGCACATGGCTGTGACGAGCATAGGAAAAAGTTGAACCTGACGCTGTGTTCGTCGTCATCATACATTAAATGCTATGTGTAGACTGTCATTAATTTGTGTGCTCTCAAAGGGGTGAGGTTGTGCACAACGTCATTAAATGGCGCCTTTGTTTTGCAATCTTGCGGCTAGCAGTTAGCTCACCGGAGTACTGTGTACCGAAGTATTTTAACGAAATTTTAGATGTCTATTGACGTACTATATGTACAGTAATCACCAGACGTGGAGTAGTTGAACTGTTCGCTGTCAGGCGAAAGTTTCTACCGAATAGGGAGACCCATGGAGTCTGCAGTGGAGAGTTCCCCCATTGTTACAAACAAAGGCATCACACTGCCTGAAGTGGAGAGTGCGTCCATTGTTTCAGAAAGCGAGAAACCTATTATCTCTGCAGTAGAGACAGTGGAGAGTCCCTCAACCATTTCAGAAAACAAGGAACTTACACCTTCAGCAGTGAAGGACAAGGATGTCTACATAGTTTCAGAATGCAAGAAAACTACCCCCTGTGCAGTGGAGACTAACTACAATGAGGATGTCACCATTGTTTCAGAAAGCACCGTCAGCAGTGGAGAATGCCTCTATCATTTCAGAAAGTTTGTCACATGAGGGCCATCGCCTGTGGATCGGTAACATCGATCCCAAAATCACAGAGTACTACCTGGTGAAGCTGCTGGAGAGGTTTGGGAAAGTGAAACAGTTTGACTTCCTGTTCCACAAGTCTGGACCAATGGAGGGCCAGCCCCGAGGATACTGCTTTGTTAACTTACACACCAAAGAGGAAGCAGAGCGGGCGATCCATTGTCTAAATGGGAAGCTGGCCCTCTCCAAGAAGCTGGTggtgcgcacacgcacacgcacaggtAAAGTCACCTTGACCAAGGCCATGTACTGGAGATCCCCTTCAGCTTTGTCTTTAACCGAGGGATACCAGACAAACAGTGACACGCTACCTGCCTGCTCCATGGTGCGACTGAGCTAAACGGGCTCCGCTCTGGTTACCTGGTCCAACCATGGTGCGACAaGGTTTGAGGGTTTCCGAGGGGATAAGAATGGTCCTGCCAGCCTAGTGCCAtcgtgcagtgcagtgcagtgcagagCTAGACTTACCAACCAGTCTTAGTACAAGTGCGACGATCCATGCGATTGAGGCCAAGCTTCAGATGATGGAGAACCCAGATGGAGAGGAGTACCAGGGCCActcaacctacatgtacaacaAGCCCCCAGAGAAAcacctacagccctacagcagACCCTTCCTCAAGTTCAGGAGATGACACAAATGAGATGGAGACAGACCATCCAACACCTAGGCTCGAACAATTccggtaactttcccaaaatgtcCAGGTTTTGCAGAAATCCCAGTTTGAAGATTCCCAGTATCagaagggaataagcaggaaatccagaatcctccaaccagAATTTGTGGAAAATCTGGTAATTTTGGTAAAGTTACTAGAATTTTAGTCAAGTTACTGGAATTGTGGTCAAGTTACTGGAATTGTGGTCAAGTTGCTGGAAGTGTGGTCAAGTTACTGGAAGTGTGGTCAAGTTACTGGAAGTGTGGTCAAGTTACTGGAAGTGTGGTCAAGTTACTGGAAGTGTGGTCAAGTTACTGGAAGTGTGGTCAAGTTACTGGAAGTGTGGTCAAGTTACTGGAATTGTGGTCAAGTTACTGGAATTGTGGTCAAGTTACTGGAAGTGTGGGCAAGTTACTGGAATTGTGGGCAAGTTACTGGAAGTGTGAATATTGTCTAACTGTTAAGTTATTATTCCACTTTGGCACTCAGGCTACTTCCACTAGTCTGTTTGGACTATCATGTTTGGCTTGGTAATGACTgcagttggcaagagcacaaacagatctgggaccaggctacagtgGGAGAGGTCAGGCCACCAAACCAAAACCTCTGTACTGTATGGCTTCAGGTTTGGACAGACAGCACGACAAGCCATTTGACAGGTGAAAGCCTCACACTGTCTGCTTTATTTTGAGCTAGTGTGTATTCTTACTTGGGAGAGGAGGGATTTTTTATTTGAGTTGTTTTTCTAACGGCTATATATTTTATGATGTGTACAATATCACACCTTCAATTTATCTTACTGTTGTTTATTTTTGTCATTGTAATGTTTAATTTCTCTCTTTGCTGTTTAGTGTTGGGAGTTTGACATTATTAGCTTTAATAATTACCAATTTTCCAGGGCACGTcgtcacaaagcgtctcagagaaggagtgctgatctaggatcaggtcccttctcttattcattatgattatGATGTAGAAGGGAagcctagatcagcactcctactctgagatgcttggtGAATATGGGCCCTGATTTAGTGGATCATATAATGTTTCCTATACATGCTCAGTCTGAGTCCCTTATTCAGCATGTTATGTTGGTCTGTAGTCACAAAAGGGAAGACATGGCATAAAATTGTGTCTTTTGAAAACTGAGTAGTTGTCACCTTTTCTGTGTTTCTTGTGATCAAAAGTCATGAACATGTATTTAATTCATGTTTGTTTGAGTGTGATTTGATGGCAACTTTGTACAATTGGAACTATTTTTATTCATGCTATGACACCCAGTAAACCAAGAAACTACATTGTCACTCAACTCATGCATGGTTCcttcattaaatagtattttttaaattgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1184634 lncRNA downstream 118433 13346759 ~ 13348599 (-) False G1039501
TU1184633 lncRNA downstream 118433 13346866 ~ 13348599 (-) True G1039501
TU1184536 lncRNA downstream 192647 13274150 ~ 13274385 (-) True G1039426
TU1184532 lncRNA downstream 193885 13272904 ~ 13273147 (-) True G1039422
TU1184341 lncRNA downstream 229398 13236131 ~ 13237634 (-) True G1039254
TU1185029 lncRNA upstream 22839 13520030 ~ 13520304 (-) True G1039843
TU1185033 lncRNA upstream 26503 13523694 ~ 13523938 (-) True G1039846
TU1185035 lncRNA upstream 27734 13524925 ~ 13525141 (-) True G1039848
TU1185039 lncRNA upstream 32393 13529584 ~ 13534446 (-) True G1039851
TU1185017 lncRNA upstream 82020 13579211 ~ 13579815 (-) False LOC110536997
XM_036936961.1 mRNA downstream 154 13442516 ~ 13466878 (-) False LOC110536992
XM_021622685.2 mRNA upstream 24084 13521275 ~ 13554757 (-) False LOC110536995
XM_021622683.2 mRNA upstream 48705 13545896 ~ 13551772 (-) False LOC110536995
XM_021622682.2 mRNA upstream 48705 13545896 ~ 13554757 (-) True LOC110536995
XM_021622688.2 mRNA upstream 69032 13566223 ~ 13570329 (-) False paqr3b
XM_021622687.2 mRNA upstream 69032 13566223 ~ 13571020 (-) False paqr3b
TU1184637 other downstream 111237 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 144316 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 290589 13147658 ~ 13176443 (-) True G1039364
TU1184467 other downstream 314725 13151021 ~ 13152307 (-) True G1039366
TU1183992 other downstream 745878 12720501 ~ 12721154 (-) True G1038943
TU1185574 other upstream 681467 14178658 ~ 14180141 (-) True G1040300
TU1185711 other upstream 810409 14307600 ~ 14311052 (-) True G1040432
TU1187996 other upstream 2606972 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 2827772 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 2827772 16324963 ~ 16328114 (-) True LOC110537059

Expression Profile