RNA id: XM_021622683.2


Basic Information

Item Value
RNA id XM_021622683.2
length 4296
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110536995
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13521275 ~ 13554757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggcatttttacaaggattaaatgtcaggaattgtgaaacacttagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtagatgcagtaaagaggtcaatggaatgCAGACCGTGTGGGATAGAAGGGCAATGGATTGGcgcacattcaacaaatctgatctaagTGAATATTTGTCAAATCCGccatgattgatgtattgtaacaggcccacaatgtggGTACTAAATTCTGATTTGGATATATTTAGCTGTTTTcgctgcataacatttagaagtttccccttttcaggtttagaagaatGCTAACTCCCGTTTGTATAAGCAGGTTAGCGTAGCTAGCACACAGAAATTGGTGGTGTAGTCAAAGTCGTTTTaaactgtaatgcagttgattgatgacatgaacatgtattggggttgacctccatacaaacatatagtgtgaaatacacataaACAACAGCCTAAATGTAGGCTGATTTTGCTGGGGGGCAGTGAGGAGATTCGGGATAGAGATGCAGGTGGGAAAACAGTGCATCCTTTTTTACTTCATGCTATTTTGGCTGAGCTATGTCAAGCAGCGGGAAACGGACTCCAACAACTCAGAAGAGCCTTAAACCTGTGCCAGAACCGTGAAATCTGATGATCCAAAATGCCTCATAAACTCCTCAAGTTACTCCTGGGAAGTTACCAGTGGCTGGCCAGTTACTGGCCCGTCCTTATGCCGAGGGGAATCCGCCTGTACACATTTGAACAGATCCCGTTATTCATGAAAGAAAACCCATACATTACAGATGGATACAGAGCCCGTTTACAATCCAAACTTTGTTTAAAAAGCATCTTTGTGCTGTCCAATGAAACAGTCAACATATGGACTCATCTGTTGGGCTTCCTCCTGTTCTTCCTACTGGGGGTGAATGACATGTCTACAGTCCTGCCGGCTTCAGGTGCCAACAGAGAAGACTATGTCATCTACTGCATAGCACTCTTCTGCTTTcagGTGTGTATGCTGTGTTCTGCAGGGTATCACATGTTCTCCTGCCACCTCTCAGAGAAGACATGTCACCGCTGGTTGGCGCTGGACTTCGTTGGAATCTCTGTGGGAATCCTGGGCTGTTACATTCCAGGGGTCTTCTATGCCTTCTACTGCATCACTTTCTGGAGACAGGTGTACCTGGTGACTGCTCTAGCGTTGATATTGGCCGTGTTCTTAGCTCAGATCCACCCTCACTACCACTCTAAGGAGTGGCGACACCAGCGTACTGCCATCTTCTGCTCCGTGGCTGGCTACGGGATCATCCCCGCCGGCCACTGGGTCTGGCTCAATGAAGGCCTCGGCTCAGCTGTCGTCCAGtTGTTCCTCCCTCGTGTGATTGTGATGTATTTGATAGCTGGAGCTGCGTTCCTCTTTTACATCTCTAAAATCCCAGAACGCTGCTTCCCAGGTCAACTGAACTATCTGGGTGCCAGCCACCAGGTGTGGCATGTCCTTGTGGTGTTTTTGCTCTACTGGTGGCACCAGACTGCAGTATATATAATGAAATTCAGGCACAGCCAGCCATGCCCTCCTTTCTAcacccagcctggtctcatagactagatgtaacatagtaaaagtacatccgggacactcaaattagtatgatatgttacgtttggtatgggtGGTTGGTcgaggtggatgggtgggtgaatGCCTAGCTATCCAAAAAGTTGTGTGTTCAAATCTCGTCACGGACAACTTTAGAAAATTTTCAACTACTTgaactttttagctactttgaaactacttagcatgttagctaacccttcccctaactcttTTAACCAGCCCttcccctaactttaaccctttaacctaactccgaaccttaacccataaccctaaactagctaacattagccagctagctaacgttgggtACAACTAATTGGTATTCGTACCATATCATACGtattgcaaatttgtaacatattgtacatttacaGATTCATAACAAATTGTACATTTAGCAAATTCTTAACATATCATccaaattgtaattcataacttatcatatgaaatggatgatgacatccacaaattaatacatacaatacgaaacataacatatcatactaaatgaagTGTCtcagaattacatacagaataatacaaaatgctgaGAGACCAGATTGCTACACAAACAGTGACTATAGCCTCAAGCTGGCTCAGCCACCGACAGAGCAACAACCTGTACTGCAGCCACTCGATGCAATTAAACCAGACTACAGACCTCTAGAATTCTATCATACAGATGCCCAGTCAAGCAGACAAGAGAGTAGCCTCCCTACCAGAACAACTATAACCATACCGTTAGACCTTGCAGATGTCTGTAGAAAGAGCGAACAAGTAAAAGAGTGGAACCATCTCTCTGGTTTTAAGGATTGCGATTAGTGGTATGCAATCGTATCTGCTTTCTGCTGAGACTTCTGTAAGGCCAGGTTATAAGAAGGAAAGACATGTCAGTCATAGCCTGGTCGCAGGTCTGGGAAGcaagatggcacaaacagacctgggactagTCTTGGTGAAGTCACTAGGACACACAGTACAGCTTCAACTGAACATTTTCTGTTATTCTCCGATTATCTTTTCGTATTCAATATAGTTTTTTTAACCTGATTTGTATCTATTAATTTGCATGTAAGCTACTGTTTGAATGTTACATGCTGTGAAATGGTACTTCTTGAAATGCTTTCTTGAGCACATGGGACTTTACAAGGGTTATGTGCAATCTAGAATATATATCCTTTGGAAACCGAACATAGAGCCTATGTTCAGTTGTTTTTGCCTGCATAGTTATCTTACTGTATTTCATTAATGGTGGGGCTGAGTAGTTATCTTACTGTATTTCATTAATGGTGGGGTTGAGTAGTTATCTTACTGTATTTCATTAATGGTGGGGCTGAGTAGTTATCTTACTGTATTTCATTAATGGTGGGGTTGAGTAGTTATCTTACTGTATTTCATTAATGGTGGGGCTGAGCAGTTATCTTACTGTATTTCATTAATGGTGGGGTTGAGTAGTTATCTTACTGTATTTCATTAATGGTGGGGCTGAGCAGTTATCTTACTGTATTTCATTAATGGTGGGATTGAGTAGTTATCTTACTGTATTTCATTAATGGTGGGTTACTTTTAGTATCAGTGGTCAACTGAACCCCTTCCTCTCACAATCCACTTGAATCTAAGGGCTGATTCAGGAATTGTTTAGAGAGTTGGTTACATTTAAACATAAACCCAATTAAATAGATTGGGAGTAAATGACCCTTGCTTTAATTAGTTTGTTAATAGACTATTTATGAATCCGTCCCTCTATTCACTTACTATATAACCTAACGTATCGACGTAAAAGAAACACCTGAGTAGAATACCCCACATTCTGGTCCTgatgatatttattttttttaataacttgtgggaggttctcttctgcactattcaaccaatccagtaaatgtgaaggaggagttaagatggagcgTCTTCTTTTTAAGCGTCCAAAAGCTGAAGTCGCGTCACAAGCTCTTCCATTTCCACTGAAAACAGGTTGCACCCAGTGTTTGCAACCCCGCTGATGATGCTTACTATATAGTACATGGGTGTGTGAACAACTGCATAAGAACAAATACTTTAGAGGCCAGTATTATCTATTGTATGACTAATACTGTACGGTTTTACAATCACATTACTGACAGGTCTATCTATGCACAATATGGTGTCCTGTAGATcacaggtggctggtggcaccttaattgggggggGGACGACAAGTTTATAGTAATTGGCTGGAATTGATTTGATGGAATGACATAGAAGTGTTTTAATACcattgttatgagccgtcctcccctcaccagcctcctgtatTGTAGATCTCCTACTGTGTAGCTAATACCCATAGAGGTCATTCGACCGTGTCAGATAATGATGCTCAGAACATATCACAGCCGTTAAAGGCCCACTGTGACATTCACAGCCTATATTGACTGTTCGTTAGCCTTGTTTGTAAATGAGCTTTTGTTTCAAGTATGCCTTTAATTATTTCACTGTATTTTACCTGGTTGCTATAATGTCGGTCTTTGGTTGTCCAACATTTGTTTTTCCATTCATTTAGGCATTATTGTTGGACTTACTTTTGAATGCTGGAATGCACTGACTAAAGGGACACATTATTTTAATCTGTAATATGACATGTCTCGAGTATTATAAATTAATAAAGAATGCCTAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1185039 lncRNA downstream 11450 13529584 ~ 13534446 (-) True G1039851
TU1185035 lncRNA downstream 20755 13524925 ~ 13525141 (-) True G1039848
TU1185033 lncRNA downstream 21958 13523694 ~ 13523938 (-) True G1039846
TU1185029 lncRNA downstream 25592 13520030 ~ 13520304 (-) True G1039843
TU1185001 lncRNA downstream 51417 13494179 ~ 13494479 (-) True G1039824
TU1185017 lncRNA upstream 27439 13579211 ~ 13579815 (-) False LOC110536997
TU1185019 lncRNA upstream 27536 13579308 ~ 13579815 (-) False LOC110536997
TU1185018 lncRNA upstream 27772 13579544 ~ 13579815 (-) True LOC110536997
TU1185059 lncRNA upstream 50926 13602698 ~ 13607010 (-) True G1039871
TU1185067 lncRNA upstream 75223 13626995 ~ 13627939 (-) True G1039879
XM_036936971.1 mRNA downstream 48703 13467032 ~ 13497193 (-) False LOC118937626
XM_036936967.1 mRNA downstream 48704 13467032 ~ 13497192 (-) False LOC118937626
XR_005034881.1 mRNA downstream 48704 13467032 ~ 13497192 (-) False LOC118937626
XM_036936969.1 mRNA downstream 48704 13470499 ~ 13497192 (-) True LOC118937626
XR_005034880.1 mRNA downstream 48705 13467032 ~ 13497191 (-) False LOC118937626
XM_021622688.2 mRNA upstream 14451 13566223 ~ 13570329 (-) False paqr3b
XM_021622687.2 mRNA upstream 14451 13566223 ~ 13571020 (-) False paqr3b
XR_005034882.1 mRNA upstream 16718 13568490 ~ 13571020 (-) False paqr3b
XM_036936974.1 mRNA upstream 16719 13568491 ~ 13571020 (-) True paqr3b
XM_021622689.2 mRNA upstream 26949 13578721 ~ 13592519 (-) False LOC110536997
TU1184637 other downstream 190101 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 223180 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 369453 13147658 ~ 13176443 (-) True G1039364
TU1184467 other downstream 393589 13151021 ~ 13152307 (-) True G1039366
TU1183992 other downstream 824742 12720501 ~ 12721154 (-) True G1038943
TU1185574 other upstream 626886 14178658 ~ 14180141 (-) True G1040300
TU1185711 other upstream 755828 14307600 ~ 14311052 (-) True G1040432
TU1187996 other upstream 2552391 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 2773191 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 2773191 16324963 ~ 16328114 (-) True LOC110537059

Expression Profile