RNA id: XM_021622688.2


Basic Information

Item Value
RNA id XM_021622688.2
length 2590
RNA type mRNA
GC content 0.42
exon number 6
gene id paqr3b
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13566223 ~ 13571020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGTTACCAGTACTGGCCAGTTCTGGTGCCTCGGGGAATCCGCCTGTACACATTTGAACAGATCCCGTTATTCTTGAAAGAAAACCCATACATTACAGATGGATACAGAGCACActtgacatcaaaactatgtttAAAAAGTCAACATATGGACTCATCTGTTGGGATTCCTCCTGTTCTTCCTACTGGGGGTGAATGACATGTCTACAGTCCTGCCGGCTTCAGGTGCCAACAGAGAAGACTATGTCATCTACTGCATAGGACTCTTCTgctttcagGTGTGTATGCTGTGTTCAGTGGGGTATCACCTCTTTTCCTGCCACCGCTCAGAGAAGACGTGTCACCGCTGGTTGGCGCTGGACTATGCTGGAATCTCTGTGGGAATCCTGGGCTGTTACATTCCAGGGGTCTTCTATGCCTTCTACTGCAACATTTTCTGGAGACAGGTGTACTTGGTGATTGTTCTAGCGTTGATATTGGCCATATTCTCGGCTCAGATCcaccctcactacctctctaagGAGTGGCAACACCTGCGGACCGTCATCTTCTGCTCTGTGGCTGGCTACGGGGTCATCCCAGCTGTCCACTGGGTCTGGCTCAATGGAGGCTTCAGCTCCGCTGTCGTCCAGTTGTTCCTCCCTCGTGTGATTGTGATGTATTTGATAGCTGGAGCTGCGTTCCTCTTTTACATCTCTAAAATCCCAGAACGCTGCTTCCCAGGTCAGCTGAACTATCTGGGTGCCAGCCACCAGGTGTGGCATGTCCTGGTAGTGTTTATGTTCTACTGGTGGCACCAGACTGCTGTGTATATAATGAACTTCAGACACAaccagccatgccctcctctctACACCAATAGTGGCTAGCTGGAGCCACACAGACTAGCATCCAGCCACCAAGCAACCACAGCCTGTACTGTAGCCACTCAATGCAATCAAACCAGACTACAGACCTCCTATATAAGCCTATTCTACAGATGCCCAGTCAAGACCCATATCCAAGAATACCCATGACAGTACTGTTAAACCTTGTAGAAAGCTTGAAACCATCTCTGGTTTTAAGGTTTGCTATTGGTGGTATGCAATCGTATCTGCTTTCTGCTGAGACTTCTGTAAGGCCAAGTTATAAGAGATGGAAAGACAGGTCAATCATAGCCTGATCGCAGGTCTGGGAAGcaagatggcacaaacagatctgggaccaggcaggGTAAGTCACTAGACACACTGTACACAATACATATACCACTACAGCTGAACATTTTCTGTGATTCTCCAATTATCTTTTCATATTCAAGATTTTTTTAACCTGATTTGTATCTATTCATTTGCATGTAAGCTACTGTTTGAATGTTACATGCTGTGAAATACTTCTCTGCTGCCTTGAGCAAATGGGACCTTCCAAAGGGTTATGTGCAATCTACCTACCTACTATCCTATGGAaatggaacaacaacaaaaaagttattTTTGCTTGAGTAGTTTTATCTGTATTCATCAATACTTGAATTGTTTGTGTGTTGTATTATTGCCTCTGGCACAAACTTCATTGGGTTCTATGGTGGGGTTGAGTAGTTATCTTACTGTTTTTCATTAATGGTGGGGTTGAGTAGTTATCTTACTGTTTTTCATTAATGGTGGGGCTGAGTAGTTATCTTACTGTTTTTCATTAATGGTGGGGTTGAGTAGTTATCTTACTGTTTTTCATTAATGGTGGGGTTGAGTAGTTATCTTACTGTTTTTCATTAATGGTGGGATTGAGTAGTTATTTTACTGTATTTCATTAATTGTGGGTTACTTTTAGTATTAGTGGTCAACTGACCTCCTTCCTCTCACAATCCACTTGAATCTAAGGGCTGATTCAAGAACTgtttagagaaatgtaaccaaCTAAACATAAACCCAATAAAATAGATTGGGATTAAATTCCACTCGCCTTAATTTGTTAGTGTCCCTGTGTCACTCACGGGTGTGAACAACTGCATAAGAACAAAAGTCCTAATGGCCAGTATTATCGATTGTATGTTATACACCACAATAGTGTAGTACACTTGAATTCAGGTTAGGTCAAATtactacccagtctctctctatgcaACAATATACTGTACATCTCCTGCCATTTTAATCCAGTTCCCAGTCATTTAATTAAAGGAAATGTATCCAGCAATGCAATGACATTTTGGTCACACGTTTTTAGATTGTCTCCAGCTGACATACTTAGCCTCTAGTCAGATAAAGATGCtctgtcagagtcgtgtgtataggtggcagggaagtcgtGACATGCTCAGAACATATCACAGCCTGTAATGACTGGAAATGTAGCAGACTGTTTGTTTGCCTTGTAAATTCACTTTTGATTTTAAGTATGACTTTCATTATTTACTGTGTAATTACTGTATTATTTTACCTGTCTGTCTTGTTTGTTACATTGTTCAACAtttgtttttaatttattttggcATGGTTGATGGACCTTTACTTTTGAATACTGGCACTAAAAGGGGCACATTATTTTAATCTATCTGTTATATGACATGTTTCTCTTTGATTACTATCAATAAATAAAGAATGCCTCAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1185039 lncRNA downstream 31777 13529584 ~ 13534446 (-) True G1039851
TU1185035 lncRNA downstream 41082 13524925 ~ 13525141 (-) True G1039848
TU1185033 lncRNA downstream 42285 13523694 ~ 13523938 (-) True G1039846
TU1185029 lncRNA downstream 45919 13520030 ~ 13520304 (-) True G1039843
TU1185001 lncRNA downstream 71744 13494179 ~ 13494479 (-) True G1039824
TU1185017 lncRNA upstream 8882 13579211 ~ 13579815 (-) False LOC110536997
TU1185019 lncRNA upstream 8979 13579308 ~ 13579815 (-) False LOC110536997
TU1185018 lncRNA upstream 9215 13579544 ~ 13579815 (-) True LOC110536997
TU1185059 lncRNA upstream 32369 13602698 ~ 13607010 (-) True G1039871
TU1185067 lncRNA upstream 56666 13626995 ~ 13627939 (-) True G1039879
XM_021622685.2 mRNA downstream 11466 13521275 ~ 13554757 (-) False LOC110536995
XM_021622682.2 mRNA downstream 11466 13545896 ~ 13554757 (-) True LOC110536995
XM_021622683.2 mRNA downstream 14451 13545896 ~ 13551772 (-) False LOC110536995
XM_036936971.1 mRNA downstream 69030 13467032 ~ 13497193 (-) False LOC118937626
XM_036936967.1 mRNA downstream 69031 13467032 ~ 13497192 (-) False LOC118937626
XM_021622689.2 mRNA upstream 8392 13578721 ~ 13592519 (-) False LOC110536997
XM_036936976.1 mRNA upstream 25361 13595690 ~ 13611473 (-) False LOC110537000
XM_036936975.1 mRNA upstream 25361 13595690 ~ 13611484 (-) True LOC110537000
XM_021622696.2 mRNA upstream 91139 13661468 ~ 13666755 (-) True LOC110537001
XM_021622699.2 mRNA upstream 175552 13745881 ~ 13756690 (-) False LOC110537003
TU1184637 other downstream 210428 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 243507 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 389780 13147658 ~ 13176443 (-) True G1039364
TU1184467 other downstream 413916 13151021 ~ 13152307 (-) True G1039366
TU1183992 other downstream 845069 12720501 ~ 12721154 (-) True G1038943
TU1185574 other upstream 608329 14178658 ~ 14180141 (-) True G1040300
TU1185711 other upstream 737271 14307600 ~ 14311052 (-) True G1040432
TU1187996 other upstream 2533834 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 2754634 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 2754634 16324963 ~ 16328114 (-) True LOC110537059

Expression Profile