RNA id: XM_021622709.2


Basic Information

Item Value
RNA id XM_021622709.2
length 1857
RNA type mRNA
GC content 0.48
exon number 6
gene id plpp1a
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 14083339 ~ 14108194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATAGTCTCTTCGGTCCATCCTCTTCGCCAGCTGCCATAACGAAACCCCACTGTGCTCATGGCTCTTTGCGCTGTCTGGTAGACTACAGAGTATACAGACCTCTCTACATTATAGCCTTCACCGTCGGCTCTGCCAACCGATTTTAAATTATACGCAAAGGACTGTCTAATTTACCGGGCCACGGTGATTAGAATTTCGATGCGCACGACGATTCCATGCGCACGATCATTCAAAGGGGAGGATCTGCTCTAACATTCTGTGTCAATTTACGGCATTTACGCTGTCTGTCGCCATTCTAAGGCTTCAAAGGTTAGGCTTCTCAATTGACGGTTTCTAATATTATTTTTAGGTCGAAGTATTGTTTAGGTTTAGTCTAATCAGATCTACGGTTACTTGGCTACTAAGCTTTCAAGGATACGACAACAACACGAGTGGTCTAAGGATCATCTGTGTCAACGAGCTGAGGAGAAACCGTAAAAATGTTCGAGACGAGAGGGATTCCTTTTATTCTGCTTGACATCGCCTGTCTAATTCTCGCTGGACTCCCGTTCGCAATACTCACACCGCTACACAATCCCTTCAAACGGGGATTTTTCTGTAACGATGATTCGATCAAGTACCCTCTAAAAGAAGACACCATATCCTATGAGTTGTTAGGTGGAGTTATGATACCAGTCACAGTACTCACTATGGTCTTTGGAGAGTGCCTTTCGGTCTATCTCAAACGCATCAAATCAAAGTCCTCTTTCAGCAACATGTATGTGGCCCGTGTTTACAAAGCCATCGGCACATTCGTGTTCGGGGCAGCCATGAGCCAATCGCTCACTGACATCGCCAAGTATTCGATTGGCCGGCTCCGACCCCACTTCCTGGACGTGTGCAAGCCTGACTGGAAGCTGATCAACTGCACGGCAGGCACCTACATAGAGGACTTTACCTGCACAGGGGACGCACGCTTGGCCAATGAGGGCAGgctGTCTTTCTACTCTGGCCATTCCTCCTTCTCCATGTACTGCATGCTGTTCCTGGCACTGTACATCCAGGCCAGGCTGCAGGCAGGGTGGGCCAGACTCCTGAGACCAACCCTACAGTTCTTCCTGATCGCGGCGTCTGTGTACACCGGACTGTCTCGTGTGTCTGACTACAAACACCACTGGAGCGACGTCCTGGTTGGCCTTATCCAGGGAGTGCTCATGGCAACACTGGTAGTCTTCTTCGTGTCAGACTTCTTCAAGAAGAAGGTTGAGCCTCAGAAGGAGGATATTCCCCACACCACCCTGCAGGAGACACCCACAAACGGAAACCACTACGACAGCAGCCCCAACTAAACTATAAAGGAGAGGAACCATCCGGAACCATACATGGCGTGTAGCCAGTGGGGAAGTGTTTACTGCATGCGCATCATACCCCACTAAGGGACGGACCACTGGGGTGGACAGAAAGGCTTAAGtaccaaatggccccctattccctatatagcatagcctatagggctctggtcaaaagtactgtactatgtagggaaatagggtgccatttggagcgTTGCCAAACCTGTGAATGTAACCCTGCTTTGTGCATTTCTGACCTATGACCTGGAGCCTAGCTCCCTATTGGACATTGAGTCACACCCATGTTGCCTTGGCTGGACTGCTACTATCATAGCTTCCTTTGTATTATCGTTACTATCCCAAACAAGACTAATATAAAATGTATCTGCCAACAAGACTAGTagaatatatctgtacctgactatcccaacaagactaatataatatatctgtacctgactatcccaacaagactaatataatatatctgtacctgactatcccaacaagactagtataatata

Function

GO: NA

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1185562 lncRNA downstream 4650 14070953 ~ 14078689 (-) True G1040292
TU1185559 lncRNA downstream 8261 14070953 ~ 14075078 (-) False G1040292
TU1185545 lncRNA downstream 59874 14023034 ~ 14023465 (-) True G1040283
TU1185543 lncRNA downstream 60673 14021555 ~ 14022666 (-) True G1040282
TU1185331 lncRNA downstream 96926 13986092 ~ 13986413 (-) True G1040094
TU1185660 lncRNA upstream 103901 14212095 ~ 14242009 (-) True G1040383
TU1185703 lncRNA upstream 183740 14291934 ~ 14292138 (-) True G1040424
TU1185721 lncRNA upstream 210167 14318361 ~ 14318603 (-) True G1040442
TU1185760 lncRNA upstream 233362 14341556 ~ 14341809 (-) True G1040479
TU1185775 lncRNA upstream 256297 14364491 ~ 14364840 (-) True G1040494
XM_021622707.2 mRNA downstream 66786 13991357 ~ 14016553 (-) True dhx29
XM_036936981.1 mRNA downstream 196204 13811384 ~ 13887135 (-) False LOC110537005
XM_021622700.2 mRNA downstream 276435 13766381 ~ 13806904 (-) True LOC110537004
XM_021622699.2 mRNA downstream 326649 13745881 ~ 13756690 (-) False LOC110537003
XM_021622696.2 mRNA downstream 416584 13661468 ~ 13666755 (-) True LOC110537001
XM_021622710.2 mRNA upstream 11959 14120153 ~ 14155328 (-) True LOC110537010
XM_021622721.2 mRNA upstream 72209 14180403 ~ 14198027 (-) False LOC110537014
XM_021622722.2 mRNA upstream 72209 14180403 ~ 14198027 (-) True LOC110537014
XM_021622718.2 mRNA upstream 89964 14198158 ~ 14213573 (-) False zmp:0000001301
XM_021622714.2 mRNA upstream 89964 14198158 ~ 14213574 (-) False zmp:0000001301
TU1184637 other downstream 727544 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 760623 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 906896 13147658 ~ 13176443 (-) True G1039364
TU1184467 other downstream 931032 13151021 ~ 13152307 (-) True G1039366
TU1183992 other downstream 1362185 12720501 ~ 12721154 (-) True G1038943
TU1185574 other upstream 70464 14178658 ~ 14180141 (-) True G1040300
TU1185711 other upstream 199406 14307600 ~ 14311052 (-) True G1040432
TU1187996 other upstream 1995969 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 2216769 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 2216769 16324963 ~ 16328114 (-) True LOC110537059

Expression Profile