RNA id: XM_021622714.2


Basic Information

Item Value
RNA id XM_021622714.2
length 2743
RNA type mRNA
GC content 0.44
exon number 18
gene id zmp:0000001301
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 14198158 ~ 14213576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCAGAAATACCATGTCAAAAATAGGATTAAGATTCCATTGATTTTATTACTGCTCCGATGCTTTTAGGACCACATATAGTAGAAAATTATGCATTGCCTGTTTTCCTTGCAGGTGTAATTGAATGAAGCGCCGCCTACCAATGTCCTTTTTTGTTCATGGTAAATGCTCAAATGTGTATACCAGGTGGGTAAGTCATGTGATGTCATTGCTTTACTGGTAGTTTGTGCTCCATGAGGTCTGTTTGTGGTCATCACTAGGCAACGAGAGTGTTCAGTTTACAGTACCTGCACCGCAAAGGTGTGTCTGTAAGAGGACACGGTGCTTAACCAGCAAACTATTCTAGGATCGCCTGGGGCagattccttctccaccaaaatATTTATGGTACATTATTTAACACCAGGATTACTTCAGGTTGGCACTTTTTCAGTAAACGATATTGATCATCTTTAGAGCTTTGTATGCCTGTTTCTGTAGACAGAATGGCCTTAGCAAGTGGACACTGGGTTGCCAAGGAAACGAAAGGTAAACCGCCAAGCCccagGCACAGCCATGCGCTAGCTGTGGCTGGGAATATAGCTTTCCTGTTTGGAGGGGTGTCCACCATATCCCATGAGGAGGAGCAGCCAGTATATTTGAATGACTTCTACATGCTCACAGTTTCAGCCACTCACATCACATGGGAGGTGATGCCACAGAATGGGGTTGTACCCTCAGCAAGAGAAGGACACACACTTTGTGTGGTTAAAGGCAAGCTCTACCTGTTTGGAGGAGTGGACAGTCCGCAGGCTGGAGAATGTCTTCCTGGAGTCTACTGCTTTGACATAGTGTCATTGACGTGGGAGCGGCTTGCCACAGGGGGTGTGTCTCTTAGAACCATCAGACACAGTTCCGTCTCCGTGGGAGACAACATTTATGTCTACGGTGGGCTCCTAGATGGTGTCCCCACTGATGACCTCATGGTGTTCAACACAGTCTCTCTGAACTGGACCCCAGTCAAGACCACTGGCACTCTGCCATCTGCAAGATACAACCACACGTTTGCTGTAGTCAGTGAGCAGGTGTTCATGTTTGGGGGATGTGCTGAGGATGGCTGCTACTACAAAGACGTTCATGTTCTCAACACGGAAACCCTGGTGTGGCAGAGGTATGGTGTGAAGGGGGAGTCGCCCCTGGCCTGTGCAGGTCAGACCCTCACAGCACATCATGACAAGGATATTTACTTGTTTGGTGGAAAATGCACCAGTCAGGATGGAACTGTCACATCAACCAATGAAATTCATAAATTAAGCATTGCTAAGATGAAATGGAAGGTGCCTCTCTATGTGGGGATTCCTCCGGCCCGCCGTCATGACCATACAGCCTTCATCCTTCAcagccatATATATGTATTTGGCGGCAAAAATGAAGAACAAGAATTCAATGACCTGAAGGTGATGAAATTGATTaacccatccgaaagacagccaGTGATGAAGCAGATTCTATCTGAGTTTGGGCTTCAGGGAGTCAGCCATGGCTTCGTGCCGACAAAGGTCCCCAATGTCAAGTATGAGCTGAGTGAGTCTCCATCTCTTTTTTCTGTGAGGACGGATGCAGCTGCCTCTGCACAGGTTACAGCCCAAAGAGACTTCAGTGCCGTCCGAGATGAGGCGATGGATATGATCCATAAAGCTTTCTCCATGCTTGATGGAGAGTTTCAGAAGCTTGACAGAGAAAGGTCAGAGCTTGCTCAGTCTGCAGCTGCTCTTCAGTACAAGAGAGAATCTCACCAAGCCCACCATCAGCAACAGGAGGAGGAACTACAGGAAATGCTTGAGCGACACAGAGCCCAGAATGAGACCTGGCTACGTGCACGGGCAGAGGAGAATGACAAGGAAAGGAAGGGGCTGTGTAAACTCAGGGAGGAGATTGTGCACGAGCAGGGGAGACTGGAAGAGGAGCAGGGAAACATCCAGAAACGCAGCGAACATCTCCTATCCATCATGCAACAGTTTAAAGGCATGTAAAGACACGTAACCATGGCAACCAACTTGGACGTGCGGAGTTTGTGGGTGTGGCTTACTTTCCAAGGATGACCAACTCAAAAGCGTCTGTAAAAAGGAAATGTGACATTCATTTGTGTTTTTCCACTGGTGGGTGTGTTTGAATAGTTAGCATTTTGTGCATAGCTAAGATTAACTTTTGTTGTCTTTTGCCAGATAGTCATAATATCTTTAGCGAGACAGGGGGATAATTTTGACACTGTCAAAAGAAAAAACACCACTCAAGGCATTTGTTTAAACCTCAGGAATGGTTGCTAAAAAAAATCCTAGGACATATCAAAATTGGTAATGATAGGTCTAAGCAAAATGTTGTAAAGGAGAATAATTAACTGAGTTGTAGATTGATGTAGCCTAATCATGTTCATAAAAATGTTGGATTATATCTTGTCAAATCTGCATAAAACAACTTTCTGTTCCCTCATCTTTCAAATAATCCTACACTGAAGGCTTACACTTTTATGAACATACTTTAAAAGAACTGACGGAATGTTATATTCTAAATGTGGGCAAACCAGATATTTTCTTAGGCAAACCCTGTATGGGAATAGATAACTCACAAATTAAACCAAAAAAGATATAGAAAAAAATGCTTTGCATAAGAATTGGTTGTCAATTAAATAATTTACTCAAAGAGCTTTCCTCTTGTCCTCCAATTGTTACCAGCCCTGTCGCagcatagagatcctattaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1185562 lncRNA downstream 119469 14070953 ~ 14078689 (-) True G1040292
TU1185559 lncRNA downstream 123080 14070953 ~ 14075078 (-) False G1040292
TU1185545 lncRNA downstream 174693 14023034 ~ 14023465 (-) True G1040283
TU1185543 lncRNA downstream 175492 14021555 ~ 14022666 (-) True G1040282
TU1185331 lncRNA downstream 211745 13986092 ~ 13986413 (-) True G1040094
TU1185703 lncRNA upstream 78360 14291934 ~ 14292138 (-) True G1040424
TU1185721 lncRNA upstream 104787 14318361 ~ 14318603 (-) True G1040442
TU1185760 lncRNA upstream 127982 14341556 ~ 14341809 (-) True G1040479
TU1185775 lncRNA upstream 150917 14364491 ~ 14364840 (-) True G1040494
TU1185790 lncRNA upstream 162288 14375862 ~ 14376089 (-) True G1040509
XM_021622721.2 mRNA downstream 131 14180403 ~ 14198027 (-) False LOC110537014
XM_021622722.2 mRNA downstream 131 14180403 ~ 14198027 (-) True LOC110537014
XM_021622710.2 mRNA downstream 42830 14120153 ~ 14155328 (-) True LOC110537010
XM_021622708.2 mRNA downstream 89964 14083339 ~ 14108194 (-) False plpp1a
XM_021622725.2 mRNA upstream 36336 14249910 ~ 14252948 (-) True tdgf1
XM_021622729.2 mRNA upstream 616047 14829621 ~ 14831545 (-) True LOC110537020
NM_001124403.2 mRNA upstream 656165 14869739 ~ 14875572 (-) True c3ar1
XM_021622735.2 mRNA upstream 682774 14896348 ~ 14946975 (-) False LOC110537021
XM_021622732.2 mRNA upstream 683825 14897399 ~ 14935093 (-) False LOC110537021
TU1185574 other downstream 18017 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 842363 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 875442 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 1021715 13147658 ~ 13176443 (-) True G1039364
TU1185711 other upstream 94026 14307600 ~ 14311052 (-) True G1040432
TU1187996 other upstream 1890589 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 2111389 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 2111389 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 2320043 16533617 ~ 16544726 (-) True LOC110537061

Expression Profile