RNA id: XM_021622729.2


Basic Information

Item Value
RNA id XM_021622729.2
length 1535
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110537020
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 14829621 ~ 14831545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcaaacagctgaaaatacaatattttgggttattgaaaatataaatCAGAGTGGTTTTAGATTTTAGAAAAGTTAAGGCTATTTTACAAACAAATGTAACATTCAgtcttaaaatgagtaacacatccatggccacattcaGCTAACTTTTGCCTGTCTTTTTGAGTTGGTTGTCGTCTCaatgtctcaaccaaatattacccaattatctaCGTTGAAATGATGTGTGTCCAGCGGGTACTTTCAATACTTCTTCTTTCTTTGACTTTAATACACATTCTGTCACTTTCCGTCCCATCAGTTTTGCCCCTCCCTGCCACGTTCTATCCCTGAAAAACAAAACACCTTAAAGATAAGTGACAAAATCAGAACAGAGACCTGAAGGAAGAGTGACAACATGAATTTCTCAGAGGAGTACTTGGAGGATTATTATGACACGTTCATTCAAACGGATCATTCAGAGCAGCTAAATCAGTCCATACGGGTGGTGTCCATAGTCATCTACAGCATAACCTGTGTCCTCGGTATCCCAGGAAACGTATTTGTCATCTGGATAGCTGGAgtgaagatgaagaggacagtcaACACTGTCTGGTTTGTAAACCTTGCTGTAGCAGACCTCCTCTGCTGCATCTCCATACCCTTCTCATTGGTTGAAATCATATTGAACCAACACTGGCCATTCGGAGAGGCTATGTGTAAGGTTATCCCCTCTGTCATGTATCTCAACATGTTTGCCAGCGTCTTCACCCTGGTTCTCATCAGCCTGGACCGATTTgtcctgatcatcctgcctgtcTTGGCCCAGAACCACCGGAGCATCGCCCTGGCCTGGTTGCTGTGTGGTCTGGCCTGGGTCCTGGCCTTGCTCCTCAGCCTCCCCACCATGATTCATAATGGGACCATCGATAGTGTTGACAATGACGAAATTATTATGTGCACCTCTGTACACCCCCTTGGCGAAAACAACATTAGGGGCTTCTTTTCTGCCATCAAAGCCACCCATGTTCCCAGGCTGGTCCTCGGCTTCCTCGTTCCCCTGACGGTCATCGCTGTCTGCTACCTGCTCATCGGCAGGAGGGTGAGCAGCGCTCACTTCAAGTCTCAGAGGACCTTCTGGCTCATTCTGGCTGTGGTGACAGCATTCTTTGTGTGCTGGCTGCCGTATCACACCATAGGTATGGTGATTGGGTATGGTAGGTTTGCCTCGGCCGATGAAGCCTGGAATTGGTACCCCCTGGCCATCTCTCTGGCCTATGTCAACAGCTGCCTCAACCCTGTCCTGTATGTATTTATGGGCCAGGACTTCAAGGAGAGGGTCAGGGTCTCTTTCCGTAAAATATTTGAGAATGTCTTCAGTGAGGATGCCATAACACACACATCTGTGACTCATGTCTGAGTCCAAAATGTCTGATAACTCTCCTGGGTCGTATTCATAGAACAGCATACTTAAGTTATAGataatgctaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaagaatctcaaatataaaata

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1186343 lncRNA downstream 35433 14793947 ~ 14794188 (-) True G1041049
TU1186342 lncRNA downstream 37584 14791828 ~ 14792037 (-) True G1041048
TU1186266 lncRNA downstream 156677 14670057 ~ 14672944 (-) True G1040975
TU1186149 lncRNA downstream 315033 14491274 ~ 14514588 (-) True G1040863
TU1185878 lncRNA downstream 397688 14431720 ~ 14431933 (-) True G1040597
TU1186429 lncRNA upstream 24507 14856052 ~ 14856278 (-) True G1041131
TU1186430 lncRNA upstream 25126 14856671 ~ 14856898 (-) True G1041132
TU1186436 lncRNA upstream 29072 14860617 ~ 14861126 (-) True G1041138
TU1187250 lncRNA upstream 45699 14877244 ~ 14877536 (-) True G1041831
TU1187281 lncRNA upstream 108247 14939792 ~ 14941546 (-) True G1041859
XM_021622725.2 mRNA downstream 576673 14249910 ~ 14252948 (-) True tdgf1
XM_021622713.2 mRNA downstream 616045 14198158 ~ 14213576 (-) False zmp:0000001301
XM_021622716.2 mRNA downstream 616045 14198158 ~ 14213576 (-) True zmp:0000001301
XM_036936986.1 mRNA downstream 616046 14198158 ~ 14213575 (-) False zmp:0000001301
XM_021622714.2 mRNA downstream 616047 14198158 ~ 14213574 (-) False zmp:0000001301
NM_001124403.2 mRNA upstream 38194 14869739 ~ 14875572 (-) True c3ar1
XM_021622735.2 mRNA upstream 64803 14896348 ~ 14946975 (-) False LOC110537021
XM_021622732.2 mRNA upstream 65854 14897399 ~ 14935093 (-) False LOC110537021
XM_021622730.2 mRNA upstream 65854 14897399 ~ 14935321 (-) False LOC110537021
XM_021622731.2 mRNA upstream 65854 14897399 ~ 14936004 (-) False LOC110537021
TU1185711 other downstream 518569 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 649480 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 1473826 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 1506905 13321210 ~ 13322716 (-) True LOC110536986
TU1184465 other downstream 1653178 13147658 ~ 13176443 (-) True G1039364
TU1187996 other upstream 1272618 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 1493418 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 1493418 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 1702072 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 2233776 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile