RNA id: XM_036937007.1


Basic Information

Item Value
RNA id XM_036937007.1
length 1643
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110537037
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15408991 ~ 15449896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattcaaccagtgtgtgcccagtgggtcaaGTCTGTTTTGTTTACCTCGATCTTCTCTGCACGTGAGTAGGGAGGGAGTGCTGGCGGATTAGCGTGCTCTGATCATCACAGTCTACGTGCTACCATAACAACAGTGAATGAAGAAAGGCAGTTTAGAATACAGTTTTCTCCTCATTGCCCGTGTTTGTCAGTgtgagaatctctctctctgaatttAAATCATCCTTCGGCCactaaccatgtctctgtccGGTTCGCAGACTCCAGAGGACGGCTTGTACGactcttgGGTGGAGCTGGAGGAGCTGCTATCAGCGGTGAGCAGCAGGGCGAGTCTGACAGGACAAGAACAGGACACAGCCTCCTGGGCCCTGCAGGGGGAGCTACAGAGGATCCTGCTAGAGGCACAGCTCGAGAGTAaagacagTCCTCCACAGGTGGTGACTCCTCCACAGACTGTTGCTTCCCCTCCCCACAGTGAAGGCAGCAGCAGTACAGACTGTGTTACCATACAGTCCGaagaagaaggggagagggggctgATTTCTGAGTGGGTATGGGACTGGTCCAGTCGGCCTGAGAACGTTCCACCAAAGGAGTTTGTGTTCCAGCACCCGAAGCAGCAGTCAGGCTCCCTGAGTGTAAGGAAGAGTGAGGTGATGAAGAGAGGCCTGTTCTCCTCCGACGTCCTCATGATCCTCATCCCCTCACTGCTGGTCTCACACCTTCTCACACTGGGAGtggggATATACATAGGGAAGCGATTGGCTGCCTCCACAACTAGCACTCTGTGATATATGCTTCAGGGTAGCGCTCCCATTTGTTGACGGCAGACCAATAGGAATGGCAGCCCTTCCCACAACACACCCGTTGCCCCCCTCTCTCGCTGTCATGGGGCAACATAGGACCAGGCCTTTCTTtaccactgtctctctgtctgtctcaatatgtctgtctgtccaccacCCACCAGCACgttgtgtgtctgtccatcagtcagtcacccagcATCTCTGAATCTGTGATTGTCCCAGGgccagagagagtgtgagtgtgagtgtgagtgtgtgtgtgtgtgtgcgtgtgtcagggCCGTGTCAGGGCCGGAGAGGGCCGGAGAGGCCGTGTCAGGGCCGTGTCAGGGCCGGAGAGAGACTGCTATACAGACATTGTGTCAATAACTCAGACTGAGATCACTATTACTTTAACAGCAGAGTAACACTGATCTCAGTTAACTAACAGAGAGAAACGagtgatgagatggagagagaaaagggagagagaaaaaaagagagtaaCTCCTCACTAAATCCCCATGGAAGGTATGAGCAGGGCGTTGAAGAAATAGGGTATATAGTCCAATGCTTAACCAAATTTAAACCAAAATCGAATTCTGGTGAAAGAAAGTCCCCAACAGTATATCTTTATTTGACTCTGGTCACCAATAATTTGTGTCAGAAATAACAGTTCTGTGATAAGCCTGGGTGGTTTGTATAACGTTGAGGAATGGTTTGTATAACGTTCTAAGTGGTTTATGACAACACAAGTGGCGCTggttgtttttgttgtcctatATAACCATCTGACTGTTTAAACTGTTTGAAGGACCATAAGCCCATTAAACTTCATTCCTCATACAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187567 lncRNA downstream 6216 15402415 ~ 15402775 (-) True G1042108
TU1187565 lncRNA downstream 9581 15399209 ~ 15399410 (-) True G1042106
TU1187564 lncRNA downstream 9925 15398702 ~ 15399066 (-) True G1042105
TU1187563 lncRNA downstream 10469 15398259 ~ 15398522 (-) True G1042104
TU1187561 lncRNA downstream 12694 15396090 ~ 15396297 (-) True G1042102
TU1187613 lncRNA upstream 47610 15497500 ~ 15497952 (-) True G1042150
TU1187645 lncRNA upstream 54479 15504369 ~ 15504869 (-) True G1042175
TU1187649 lncRNA upstream 61306 15511196 ~ 15543997 (-) True G1042179
TU1187637 lncRNA upstream 394831 15844721 ~ 15865647 (-) True G1042167
TU1187865 lncRNA upstream 525963 15975853 ~ 16004742 (-) True G1042386
XM_036937005.1 mRNA downstream 27048 15364686 ~ 15381943 (-) True LOC110537036
XM_021622749.2 mRNA downstream 46204 15344920 ~ 15362787 (-) True LOC110537035
LOC110536797 mRNA downstream 69650 15337519 ~ 15339341 (-) True LOC110536797
XM_021622743.2 mRNA downstream 254604 15152009 ~ 15154387 (-) True LOC110537028
XM_021622741.2 mRNA downstream 294663 15099544 ~ 15114328 (-) False LOC110537025
XM_036937009.1 mRNA upstream 129185 15579075 ~ 15595637 (-) False prune2
XM_036937012.1 mRNA upstream 129185 15579075 ~ 15595637 (-) False prune2
XM_036937011.1 mRNA upstream 129185 15579075 ~ 15596480 (-) False prune2
XM_036937010.1 mRNA upstream 129185 15579075 ~ 15596603 (-) True prune2
XM_021622758.2 mRNA upstream 149760 15599650 ~ 15611463 (-) True LOC110537042
TU1185711 other downstream 1097939 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1228850 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2053196 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2086275 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2256684 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 654273 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 875073 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 875073 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 1083727 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1615431 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile