RNA id: XM_021622756.2


Basic Information

Item Value
RNA id XM_021622756.2
length 3536
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110537041
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15614458 ~ 15644688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCGTTCATGGGCCCATACTTTTTATGTTGGTGAAAATTATTAAGATGTAGAATAATGACGAAGAGAAAAACGTAAATAAAGGCAAGGATGAGTGATGTTGAAGAAGAATGACAAAAGGGTGGATGAATATGAAGAAAATGTTTTACTGTGTAGAGCACTTTTATTTTTATGGCTCCTTGCCTTTTTGCTGCTAGGTTCACATAGGGTCCAGTCAGAGTACACTGTATTCTGTACCTAATGAAATTACAGATGGGACAAGCAAAGGGGACAATAGAAAAAATATAACAACGTTAAGCAATGCAACTTCAATGAAGACAAATTCAAAAGGAACATATTGTGGTATGGGATTATTTTTTGTTACTCCTGTGGAATAATGGAATTtcgttttttatacatttatggTGATATGGAGTAAAAGTCCGCCATATTCATTCACCACACCCGGAGTTCAACTATTGGAGGCCTACCTCCTCGACCCCAAAAGTAAGTGTTATCAAGAGAGTCATGACTCTGGGCTCCGTAGGGGCCTGTTGCCTCAGCGAAGAGGGAAAGGAGGCTCGACGGATCAACGACGAGATCGAAAGACAGCTTCGCCGGGACAAGAAAGACTCGCGCCGCGAGTTTAAGCTGTTGCTTCTCGGGACTGGTGAGAGTGGGAAGAGCACCTTCATCAAGCAGATGAGGATCATCCATGGGACGGGCTACTCCGAGGATGACAAGCGAGGCTTCACCAAGCTGGTGTACCAGAACATCTTCACTGCCATGCAGTCCATGATCCATGCTATGGAGACCCTTCAGATCCCTTACAAGTGTGAAGACAACCAGGGCCATGCAAATATTGTCATTGAAGTGGACGTAGAGAAGGTCACAATGTTTACAAATCCGTACGTTGACGCCATTAAGAGTCTATGGAATGACCCAGGGATCCAGGAATGCTACGATCGGAAGAGGGAATACCAGCTCTCAGACTCTGCCAAATACTACTTGAATGCACTGGACCGTATAGCTGAGTCATCTTATGTCCCGACCCAGCAAGACGTGCTCAGGGTCAGGGTCCCTACCACAGGCATCATAGAGTACCCCTTTGACCTCCAGAGTGTGGTCTTCAGAATGGTGGATGTGGGTGGCCAGAGGTCTGAGAGGCGGAAATGGATCCACTGCTTTGAGAATGTCACCTCCATCATGTTCCTGGTGGCTCTCAGTGAATACGACCAGGTCCTGGTAGAATCTGACAATGAGAATCGAATGGAGGAAAGCAAAGCGTTGTTCAGGACAATAATAACCTACCCGTGGTTTAAAGATTCCTCAATCATTCTATTCTTGAATAAGATTGACTTAATGCAGGAGAAAATCTTGTTCTCACATCTGGTGGATTACTTCCCTGAATATGATGGGCCCCAGCGGGACCCACAGGCAGGAAGAGAATTCATCTTGAAGATGTTTGTGGACCTGAATCCAGATTGCGATAAAATCTACTCCCACTTCACCTGTGCCACTGACACGGAGAACATTCGATTTGTCTTTGCCGCTGTCAAGGACTTCATTCTGCAGCTGAATCTGAAGGAGTACAACCTGGTTTAAAGGCTACAGCTGAATCTGAAGGAGTACAACCTGATTTAAAGGCTCCAGCTGAATCTGAAGTAGTACAACCTGGTTTAAAGGCTCCAGCTGAATCTGAAGTAGTACAACCTGGTTTAAAGGCTCCAGCTGAATCTGAAGTAGTACAACTTGGATTAAAGAATCCAGCTGAATTTTACGGAGTACAACCTGGTTTAAAGGCTCCAGCTGAATCTGAAGTAGTACAACTTGGATTAAAGAATCCAGCTGAATTTTACGGAGTACAACCTGGTTTAAAGACTCCAGCCGACCGCAGTTACAGACTCTTTAATACCATGTGAAGGAGTACAACCTGGTTTAAAGATTCCAGCCCACCGCAGTTACAGACTCCAAAAGCTGCAGCCAGAGACCAGGGCCTGGAGCCATAGTACAGATAGACTACTTCAGTATGTCTGGTTGTCTTTCACTACGGTGAAACCCTACAGAGAATTTACATAAATGACTGTATTATTTCAACTGTTCACCActgcattattttattttttatgggTATCTTTGATTTTGTTTACGAGGTGCATCATGATGATGAATATCACTGTGCCTTTTTGAGGATAGAGGATTCTGGTGTACATTGAGAGTTATTGAGAACTCTTTGTAAACCGTTTAAAACACATTATAACAGTGTAAACACACATTTCATCAGATGAGAGTTAAAAAGTGCTTTGATGTGCCTGGTGTGTCTCTGAGGACTGTTGACCGACGGCTCTCTTGTCAAAGAAAGTCTGGTGGACATTTAGATAACTGCTATGAATCACATCACATTACATCCTCCAGCGGGTCATAGTCACACTAGTGTTTCACCTATATGCATTTAGCAGGGGTGCACTGCCACTACATAAAAAAATGTAGATGTATGCCCTCCCCACCTCCCGCAGAAGGACCCCATGAAGGCCCCAAACACTGCAGTCtataatgtgttttttttgtattgAGACGTGgtttaaatacattgtttacGTATTTAAAATGAGTAGTCATTCTCTGGGTCAGAGGATAGAAGAAACAGTCATAATCATCACCTAGAACACGTAAACTAGCAAACAGGTATTATTTGCACAAttgacacattttgttgtttttctattggTGTATAGCTAAGTGTTGCCAAATTAATATTACCTCTATTGACTGAACACCCTCTACACCCTCTAAAGGGTGAAATCTGACACTGTACCATCAAATTTCAGCCAAAACGCATTTGACTCAACACTTTTCAGTTGTGATACTGTATATGTCAGCTACCAGTGTTATAAAATAAGCATATTAGCTCCCACTAAACAGTGCATCTTGATGCTGTTCCTCATCCAATGAGGGATTGTTATCATATTTACACAAGGTCTATCGTTGATCCATAACATCTGCCTTTTGACAGTCCTTTGTTTTCTCAGTGGAGATCTACTGTATTGCTTTGGCACAGTTTCAGTTTAGGGATTTTAAACTTTAATGAGTTATCGAATCACTCTCTGGTTTCAAGATTATTTCTGATAAGGGCTGAAAATGATTCCCCATATGTAGTATATGCCTCCTTGCACTTTGTAAATACAAACTGATACAGTGATTTTCTGTTTTAAGGTCCTGTAAAATGAAAAGTGTTGCAATTGTTACCTGCTGAATGAGAATGTTGGGTCCAATGACCTGCTTTGTACACAGGCATTCATTTCTTGAACTCATTTTTTGAATCATAAATATGTAATTTGAGAGTAAAAATAAGAACTTACATTTTTATATAAATTAAAGAACTAATCAAGGTTTTCAATTTGTGTCAATCTTCACACACCCTGACGTCATGTGCCATTTTAAAGTCTCGATTGAAAATAAAGCATATATATTTCACATTTATGTCAAATTATCTTCGGAGCAATTTTGTCCATGTTTTGAAATTAGGAGTGACGGAATAAATCATTACAATTAATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187649 lncRNA downstream 70461 15511196 ~ 15543997 (-) True G1042179
TU1187645 lncRNA downstream 109589 15504369 ~ 15504869 (-) True G1042175
TU1187613 lncRNA downstream 116506 15497500 ~ 15497952 (-) True G1042150
TU1187581 lncRNA downstream 171296 15442857 ~ 15443162 (-) True G1042121
TU1187575 lncRNA downstream 178419 15435545 ~ 15436039 (-) True G1042116
TU1187637 lncRNA upstream 200037 15844721 ~ 15865647 (-) True G1042167
TU1187865 lncRNA upstream 331169 15975853 ~ 16004742 (-) True G1042386
TU1187890 lncRNA upstream 345226 15989910 ~ 15994023 (-) True G1042409
TU1187908 lncRNA upstream 367543 16012227 ~ 16012762 (-) False G1042425
TU1187907 lncRNA upstream 367784 16012468 ~ 16012762 (-) True G1042425
XM_021622758.2 mRNA downstream 2995 15599650 ~ 15611463 (-) True LOC110537042
XM_036937010.1 mRNA downstream 17855 15579075 ~ 15596603 (-) True prune2
XM_036937011.1 mRNA downstream 17978 15579075 ~ 15596480 (-) False prune2
XM_036937009.1 mRNA downstream 18821 15579075 ~ 15595637 (-) False prune2
XM_036937012.1 mRNA downstream 18821 15579075 ~ 15595637 (-) False prune2
XM_036937021.1 mRNA upstream 2176 15646860 ~ 15658944 (-) False LOC110536798
XM_036937023.1 mRNA upstream 2176 15646860 ~ 15658946 (-) False LOC110536798
XM_036937015.1 mRNA upstream 2176 15646860 ~ 15658947 (-) False LOC110536798
XM_036937017.1 mRNA upstream 2176 15646860 ~ 15658949 (-) False LOC110536798
XM_036937019.1 mRNA upstream 2176 15646860 ~ 15658955 (-) False LOC110536798
TU1185711 other downstream 1303406 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1434317 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2258663 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2291742 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2462151 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 459479 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 680279 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 680279 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 888933 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1420637 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile