RNA id: XM_036937016.1


Basic Information

Item Value
RNA id XM_036937016.1
length 2513
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110536798
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15646860 ~ 15658960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGAAGACGTGTTGACTTTGAGAGACAACTAACATACCCAATCTTGAACCTGCTCTCTCCAATCAGTGAAAGAAGAAAGTAGACTGACTCCCTATTTTGCTGTTTCACTGTATTCGGAAGGTTTTAGTTGCTGACAATTTCAGGACAAGAAATTGCTGTGGAGAACGCGCAGATCCACAGTGAGGAGCCTGTTCTCATTTCACCGCTGGTGCAAGACAATGGAGACAGAAATCGAGCAGCAGGAAGAAGAGACCACTTTCAGCAACACTGACACTAACGGAAAACGCCCTGCTGAGGACATGGAGGAGGAGCAGGCCTTCAAGCGCTCTCGCAACACTGATGAGATGGTGGAGTTGCGGGTACTGCTGCAGAGCAAAAATGCTGGAGCTGTTATCGGAAAGGGTGGCAAGAATATAAAAGCCTTACGCACAGACTACAATGCCAGTGTATCTGTCCCTGACAGCAGTGGCCCAGAGCGGATCCTGAGTGTGAGTGCAGATATTGAGACTATCGGAGAGATTCTGCTGAAGATTATCCCTACTCTGGAAGAGTACCAGCATTATAACGGGATTGATTTTGACTGCGAGCTGCGTTTGCTGATCCATCAGAGTCTGGCCGGAGGCATCATTggggtgaagggtaccaaaataaagGAGTTAAGAGAGAACACCCAGACTACCATCAAGCTATTCCAGGAGTGCTGTCCTCACTCCACTGACCGAGTGGTTCTGGTTGGAGGAAAGCCAGACCGTGTTGTCGATTGCATCAAAGTTATCCTGGAGTTGGTATCTGAGGCTCCTATCAAAGGGCGTGCCCAGCCTTACGACCCCAACTTCTACGACGAGACATACGACTACGGCGGCTTCACCATGATGTTCGAGGAGCGGGGCCGGCGGCCTATGGGGGGGTTCCCCGTACGGGGCCGGGGTGGCTTTGAGCGCATGCCCCCAGGCCGCGGCGGCCGACCCATGCCCTCCTCCAGGCGGGACTATGATGATTTGAGCCCTCGCCGGGGACCACCCCCTCCCCTGCCTACCAGAGGGCGTGGAGGGAGCCGGGCTcgaaacctgcccctccccctACCACCACCCCCAAGAGGAGGAGGCGACCGGTTCTCTCATCAGAGCTATCACGGCAACATGGACGACAGACCAAACGACAGGAGAGGAAGACCAGGAGACCGCTACGACAGCATGAGTGGTGGATACGGTGACAACACTTCCTCCTGGGAGCCCTTTCAGTCTGGTGGCCGAGGGTCATACAGTGACATCGGGGGTCCCGTCATCACGACACAAGTTACCATCCCCAAGGATCTGGCCGGCTCCATCATTGGGAAGGGCGGACAGCGGATCAAGCAGATCCGTCATGAGTCGGGAGCGTCCATCAAGATCGACGAGCCACTAGAGGGCTCCGAGGACCGCATCATCACCATCAATGGAACACAGGACCAGATCCAGAACGCCCAGTATCTACTGCAGAACAGGCACGTGCTAGCACCCTTTCCTCGTCTCCGCTGAAAGCAGTATGGTGGAAACCTATTCATCCCTGTCCCCTATCCGTGTGTGAAGCAGTACTCTGGTCGGTTCTTCTAAAGAGGGAAGAGGAGCCAATCTGCCATGCCCGTTCGCTCCCTCTATTCAGAGCCAACATTCCTCTGCTTTGGGTAGTTGTGTGCCCCCCACCCTGTCATCTAACACCTTTTTAATAAGAAGTTTGGAAATTCTCTCAAAGCTGTCGGATGAGTGTatcccagttttttttttttttttttttttttttttttttttttttttgccttgctTGTTTTTTGGGGTTTTTCTTTATCGATAATTTTGCTGTTCTGTACTTGGAGTAAACTAACCTGTCTGTGTTCACTCTTGGCCTCCCCTACCTCTCCCAGTCAGTACAGCATGCAGAATGTAATCTTGTTTTGTAAGAAACAttttatgatttaaaaaaaaaaatacatttagtttATTTTTGCTTAATTTTTTTCCCCCTGCTGAAAGATAAGGGGCTgtataaaaatgtacagtaattGTGTCATAGGATGAATAAGAGTGCTAGGATTGTTTCATTTTGTTGGGAGACTGATAGGGCTAAAATAAAGTATTGTTAATTTTAAGTTTTCTACATGATTTCAGCTGGTTAACGGGGAGGGACTTGATATAATTCCTTTAATACATAATCATTGACATTTGGATCCATTTAGACTGGCTAAagcctgtttttttttatgtcgGTTTAAGCGTTTTTAACATTTTAGATGGGATCTTTGTAGACACCAGTCAGTTTGGGATGGGAATGCAGCCTTTCTTTCCATATGAGTGGCATGTCACCCCTGTTAATCTACCTGTCTGTGGGGTATAGTATCTGCTGCAAGTCGTGAGTAATAAAGTCTGTGCCACCTTTTACTAAACATGTGGGGGGAGGTTTTGTTATTTTTCCATGTTTCCTAGATGCGATAAATAAAATGGTTGTAATAAAATCAACTTGATATTTTCAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187649 lncRNA downstream 102863 15511196 ~ 15543997 (-) True G1042179
TU1187645 lncRNA downstream 141991 15504369 ~ 15504869 (-) True G1042175
TU1187613 lncRNA downstream 148908 15497500 ~ 15497952 (-) True G1042150
TU1187581 lncRNA downstream 203698 15442857 ~ 15443162 (-) True G1042121
TU1187575 lncRNA downstream 210821 15435545 ~ 15436039 (-) True G1042116
TU1187637 lncRNA upstream 185763 15844721 ~ 15865647 (-) True G1042167
TU1187865 lncRNA upstream 316895 15975853 ~ 16004742 (-) True G1042386
TU1187890 lncRNA upstream 330952 15989910 ~ 15994023 (-) True G1042409
TU1187908 lncRNA upstream 353269 16012227 ~ 16012762 (-) False G1042425
TU1187907 lncRNA upstream 353510 16012468 ~ 16012762 (-) True G1042425
XM_021622757.2 mRNA downstream 2172 15614458 ~ 15644688 (-) True LOC110537041
XM_021622756.2 mRNA downstream 2176 15614458 ~ 15644684 (-) False LOC110537041
XM_021622758.2 mRNA downstream 35397 15599650 ~ 15611463 (-) True LOC110537042
XM_036937010.1 mRNA downstream 50257 15579075 ~ 15596603 (-) True prune2
XM_036937011.1 mRNA downstream 50380 15579075 ~ 15596480 (-) False prune2
XR_002475558.2 mRNA upstream 26305 15685263 ~ 15706397 (-) True LOC110537046
XM_021622762.2 mRNA upstream 49609 15708567 ~ 15717188 (-) False LOC110537047
XM_021622760.2 mRNA upstream 49609 15708567 ~ 15718973 (-) True LOC110537047
XM_021622763.2 mRNA upstream 63899 15722857 ~ 15757869 (-) True LOC110537048
XR_002475864.2 mRNA upstream 101306 15760264 ~ 15771751 (-) True LOC110539118
TU1185711 other downstream 1335808 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1466719 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2291065 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2324144 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2494553 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 445205 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 666005 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 666005 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 874659 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1406363 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile