RNA id: XR_002475558.2


Basic Information

Item Value
RNA id XR_002475558.2
length 544
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110537046
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15685263 ~ 15706397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATCAGACAGAATAGAGAGTTGGGTCATATTCAGTAGGCACAAAATGTAAGAAAGTACCTCCCTGGAAAGAACAGCTATCTGAACAAGTAACTCATTTTCTGTTGCCAAAACATTTTGCTATGGTGTGCCCTGATGGTGGAGCAGGAGCAGTAAATCAATGTGATTTATGAGATGCATGGATCTGGTGAGGCTACTGGGGTACAAGATTGGGAGCGTGCTATGGAATTCTGCTGCAGACAGTTGCGTGTGGCCAGGTCTCTGTGGACAAAGTGCTGGGAGGCCAGGTAGACCATGCCTGCAGCAATCTGCTGGGCGATGTGCAGCATCTGGGACTGGGTCAGCTCCACCATCAGGCTGTGCTGCCCATCAGCCATCAGCACCATGTCAGGACCATGGGACCTGCACCACAACACAGACACAGGAAGAATGGACACCGGGACACAGGACGGTACCTGAGAAACTTGTTGAGGTCGCCGTGCTTCATGTACTCGAACACCATGATGAGCGGGTCGCTGTCCACACACACGCCGTAGAAGGTGAC

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0038179 neurotrophin signaling pathway biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0005030 neurotrophin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187649 lncRNA downstream 141266 15511196 ~ 15543997 (-) True G1042179
TU1187645 lncRNA downstream 180394 15504369 ~ 15504869 (-) True G1042175
TU1187613 lncRNA downstream 187311 15497500 ~ 15497952 (-) True G1042150
TU1187581 lncRNA downstream 242101 15442857 ~ 15443162 (-) True G1042121
TU1187575 lncRNA downstream 249224 15435545 ~ 15436039 (-) True G1042116
TU1187637 lncRNA upstream 138324 15844721 ~ 15865647 (-) True G1042167
TU1187865 lncRNA upstream 269456 15975853 ~ 16004742 (-) True G1042386
TU1187890 lncRNA upstream 283513 15989910 ~ 15994023 (-) True G1042409
TU1187908 lncRNA upstream 305830 16012227 ~ 16012762 (-) False G1042425
TU1187907 lncRNA upstream 306071 16012468 ~ 16012762 (-) True G1042425
XM_036937024.1 mRNA downstream 26303 15646860 ~ 15658960 (-) True LOC110536798
XM_036937018.1 mRNA downstream 26304 15646860 ~ 15658959 (-) False LOC110536798
XM_036937016.1 mRNA downstream 26305 15646860 ~ 15658958 (-) False LOC110536798
XM_036937013.1 mRNA downstream 26306 15646860 ~ 15658957 (-) False LOC110536798
XM_036937014.1 mRNA downstream 26306 15646860 ~ 15658957 (-) False LOC110536798
XM_021622762.2 mRNA upstream 2170 15708567 ~ 15717188 (-) False LOC110537047
XM_021622760.2 mRNA upstream 2170 15708567 ~ 15718973 (-) True LOC110537047
XM_021622763.2 mRNA upstream 16460 15722857 ~ 15757869 (-) True LOC110537048
XR_002475864.2 mRNA upstream 53867 15760264 ~ 15771751 (-) True LOC110539118
XM_021622764.2 mRNA upstream 76234 15782631 ~ 15793831 (-) True LOC110537049
TU1185711 other downstream 1374211 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1505122 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2329468 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2362547 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2532956 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 397766 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 618566 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 618566 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 827220 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1358924 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile