RNA id: XM_021622760.2


Basic Information

Item Value
RNA id XM_021622760.2
length 2766
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110537047
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15708567 ~ 15718973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTCTTCAGCATACTGCGAATTCTCTGTCTCAGTACTTCTTCGTGACAGCCAGGGAGGGGGAAGCACAGAACTGTAAGCTCAGGATCCATCTTAAAGAGAAAATACGAAATAGAAATCGCGTCCCAGGTTTATCTCTTAAAAGCTGTATATTTTCTGCGTGATCCGTGCTAGGGAGGCCGAGGAGGGGGCTGTGTCATCGTCTGTAGGATGTCCCGACATGAGGGTGTGAGCTGTGACGCGTGTTTAAAAGGGAACTTCAGAGGGCGCCGGTACAAGTGTTTAATTTGCTACGACTACGACCTGTGCGCATCGTGCTACGAGAGCGGAGCTACCACAACGAGACACACGTCGGAGCACGCCATGCAGTGTATATTAACCAGGGTAGACTTTGACCTGTATTACGGCGGCGAGGCGTTCTCAGTAGAGCAGCCCCAGAGCTTTTCCTGTCCTTACTGTGGTAAAATGGGCTACACAGAGACATCCCTACAGGAGCATGTCACCTCAGACCATGCAGAGACTTCCACAGAGGTGATCTGTCCAATATGTGCTGCGTTGCCGGGCGGGGACCCCAATCACGTGACTGACGACTTTGCTGCTCATCTCACACTTGAACACAGAGCACCTAGAGACTTAGATGAGTCCAGTGGCGTCCGGCACGTGCGTCGGATGTTCCACCACGGTCGTGGGCTGGGCGGTCCTAGGGCACGCAGGACCAACATGCACTTTACTAGCAGCTCCACTGGGGGGCTCTCTTCCTCACATAGTTCCTCTTACTCCCCCAGTAACAGGGAAGCCATGGACCCTATAGCAGAGCTATTGTCTCAACTGTCGGGCGTGCGGCGCTCGGCGGGTGGCCAGCTCAACTCGTCGGGCCCGTCTGCGTCTCAGCTGCAGCAGCTACAGATGCAGCTGCAGCTGGAGCGCCAGCAGGCCCAGGCGGCCCGCCAGCAGCTGGAGACGGCCAGGAACGCCACACGACGCTCTAACCCCGGCGGCAACATCAGTGCCACCATCCCACCTCCCAGCGCCAACTCGGTTGGCGTGGCCGAGAGCAATCCCATGGCCTCCCACAGCTCCCAGTTCCTGCTCACACGTTTGAATGAGCCCAAGATGTCGGAGGCGGAGCGGCAGGCGCTGGAGGGTGAGCGCGCCGACCGCAGCCTGTTTGTCCAGGAGCTGCTGTTGAGCACGCTGATGCGCGAGGAGAGCTCCTCTTCGGACGAGGACGAGCGGCGAGACTTTGCCAGCTTTGGGGCCATGGGCTGCGTGGATATCATGCCTTTAGACGTGGCCCTGGAGAACCTCAACCTCAGGGAGAGCGGTACTGGCGGTTACAACAGCAGCTCTAGGAGCTCTAAGGagcctccaccacctcctctttGATGATATCCCAGCACCACGCAGACTTTGTCCTCTGTGCTGCCACTGCCAGTGACGGGCGGGCAGCAGGATCTTTTGGGGTTTGTTTTTTGGTGATTGTAATTTCAGGTCTGTCACCTTTGTTACATTTGTGTACAACCATAAAAAAGGAGAGCGGGAGCGATTGGGGAAAGTGCAAGTGGATGAGTGCACAGCGCTAAGTGAGCgagagattatatatatatatatatatatatctcaaatGTTGATAATCAGTTCTACACAACTAATTTTTTCCTTTAGCAGGTAAGCATTAGGTAGATGTGGCAgatctctcttcctgttctcatGCAAAATGATCTCCTTATAAATACCCCACATTCAAAACCTGAAGAGGAACCAGACACCCTATGGTGAAGCTGCTGTGTGTATTTATGACTTAACAAATAAAAAGTGCTTGGATGGTTAACCATAAACTACTGCATGAGGTTCTTTGCATCGTGCATGACTTTTAATGACCTCATCattaaaaagggagagagaaaatatcCCGACGCTTTCTCTCGCCAACCATTTTAAACGGTTACTTGAAACATGATTTGAGTTTTTCCGAAAAATGTGATATTGCAAAAAAAACTGACATGCTGAATAATTTAGgaactttttaaaacttttttgtttgaaatagaaaaacaacatattGGAATCTGCAGTAGCTTTAAAAAGAAAACAATGCAATGTGTTTATCTCTCAGCTCCGGTTGGTCCTTCCCTCCTTTGTGACATCGTCTGACTATAACATCAACTTGCTGCACTAACAGCAAAACTCAAGAGAAACTCGAGACATCTGCATTCACTTAGCAGATAAAATAATACAATACTAGGAGCAGAAAAACAAGATCTTGTCTCTGACATTTTTCCTAGCTGTTGATTGTTCTAATGAGAAGCTGTGTGTAACCACCAGATGTTGTTTCTAATTTATGCACCTGTACAGAAGAACTAGTCTCCCATTCTCATCGATCGCACTCtactcttctccatctctctgcttcTGTAGGCCCAGTTCATTTGTATTACTTTCTTTGAGGAAGGGGAGCGCGAGACTTTCCACATTGCAGGCATTGTTTTTTGTTCGACTGAAGAATGATAATTTTTTCTCAGCTAAGGATAGCACCTTCTATTTATTATTTTAGTTTCTCTGATTCTTTTAAGCCTTGTAATGAATCATACCACCTCCATGCCTATACTCTTATCCTCTGTAAAATACAATGAGATGTATATTGAATTTGTGCGTTAACTTTCATAATGGTTCTAGGATATGGGcagacttttttttatttttaatgtaaATTTAGAATACAATAAACTGCGCACAGCTTTTGATGAAACCAAGCCCCTCCCTCTT

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K22376 KCMF1, FIGC; E3 ubiquitin-protein ligase KCMF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187649 lncRNA downstream 164570 15511196 ~ 15543997 (-) True G1042179
TU1187645 lncRNA downstream 203698 15504369 ~ 15504869 (-) True G1042175
TU1187613 lncRNA downstream 210615 15497500 ~ 15497952 (-) True G1042150
TU1187581 lncRNA downstream 265405 15442857 ~ 15443162 (-) True G1042121
TU1187575 lncRNA downstream 272528 15435545 ~ 15436039 (-) True G1042116
TU1187637 lncRNA upstream 125748 15844721 ~ 15865647 (-) True G1042167
TU1187865 lncRNA upstream 256880 15975853 ~ 16004742 (-) True G1042386
TU1187890 lncRNA upstream 270937 15989910 ~ 15994023 (-) True G1042409
TU1187908 lncRNA upstream 293254 16012227 ~ 16012762 (-) False G1042425
TU1187907 lncRNA upstream 293495 16012468 ~ 16012762 (-) True G1042425
XR_002475558.2 mRNA downstream 2170 15685263 ~ 15706397 (-) True LOC110537046
XM_036937024.1 mRNA downstream 49607 15646860 ~ 15658960 (-) True LOC110536798
XM_036937018.1 mRNA downstream 49608 15646860 ~ 15658959 (-) False LOC110536798
XM_036937016.1 mRNA downstream 49609 15646860 ~ 15658958 (-) False LOC110536798
XM_036937014.1 mRNA downstream 49610 15646860 ~ 15658957 (-) False LOC110536798
XM_021622763.2 mRNA upstream 3884 15722857 ~ 15757869 (-) True LOC110537048
XR_002475864.2 mRNA upstream 41291 15760264 ~ 15771751 (-) True LOC110539118
XM_021622764.2 mRNA upstream 63658 15782631 ~ 15793831 (-) True LOC110537049
XM_036937026.1 mRNA upstream 87702 15806675 ~ 15857024 (-) True LOC110536799
XM_036937029.1 mRNA upstream 160446 15879419 ~ 15908125 (-) False LOC110537052
TU1185711 other downstream 1397515 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1528426 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2352772 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2385851 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2556260 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 385190 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 605990 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 605990 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 814644 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1346348 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile