RNA id: XM_036937026.1


Basic Information

Item Value
RNA id XM_036937026.1
length 4928
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC110536799
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15806675 ~ 15857024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGTGTCGTTTTCAACTTGTTTGCCTCTAATATTACAATCATGAGGGAGTAAGGAATTAATATTTGTCGGTGCATGGAGCTTGTTCATTTCCACAAACGCTCCTGATTTTTCCAATGTTATGGTGTCACATCTGGAACACTTTCTCTCTTTTTGAATTCCAAATGTTGAAAATATGAACGAGATCATGTAGTAGTGAAGCTGGCATTTGGAAAGCCGTTAACATCAGGACCGGGTGCTGAACATGTCCATGCAGCTGTTTTCACAAGGTGTCTAAATGAGTGCTTTCTGGAGTTAATGGCCAACTTTTCGCTACACCAATGAATTATTGGAGTGGAGACGGATTTCTGGAAGATGCAATAGCTGAATATGATAGGAACTAGGAAGGGCAATGAATGCAAACCTATGGATTTGGAAACGTTCCATACGCGTTGTGCTCGCTCTGGTCTAAAAACTCATCCCCCACTTTACCTGTGCGTCCCAAATGAAAAAAGTTGTGAGTCGGTAGGCGGCGCACGTTCACACCTATGTTTTTCACTTCCTTACTTCATTTGAACAGAAAACAAATGCAGGAATGAGACGGGGTTGTCGGCACTGGCCAACACGATCTACTGAATCACAACTATTTCGCAGTGAAACTTCGCGACTGGGACGCAGTATCTTGTTCCAGCCATGATTCAAGCTACCTTTGGGTGACATACCCAGCTTTTTAAAGCTTGTTGTTCATAGAAGGAGTGAATGTGGACAATTATGTTAGTTCCGTCCTAACACACTAAAGAAGAATGAATAACTATTTTGGGGGGGAATAGCATTAGATTTTTCTGATCCTCACCGCAGAGTCAAGACATCGATCATTCCCTGAGGGTGATCTACATAACTATAGGTTACATTGCGGTCAGTCAATGTGATCAGCTTCGATTCACCTGGCAGTTTCGATTGTAAATTATGATGAAGCTCAGTCGGCAATTCACTGTTTTTGGAAGTGCCATATTCTGTGTTGTTATCTTCTCATTGTACCTGATGCTGGATCACCTGCAATTAGACCATACAAAAAGTCCAAACAACGGTGGGGATAAATTGCAAAATGGCCAGTTGTCCATCCTGCAGGATAAGATTGACCGCTTGGAGAGACTACTGTCAGAGAACAATGAGATCATAGCCAACATCAGGGACTCTGTGATCAATCTGAAGGAGTCGGTCAAGGATGGCCGTGGGGGTCTTGACGGCGGGAACATGAGCCAAGGGCCCTATCTAGAACTGCTGGCTTCGCCTCCACTGGTCCTCCCTATTGACTCACAAGACTGTCAGTTTGCGACAAGGGAGTTCTCCAAGCCAGCAGATGGGGTGCAGtTGCTAGATGTGTATGACCTCCTGACCTTTGACAACCATGATGGGGGAGTGTGGAAACAAGGCTTTGATATCACCTACCAGGAGAATGAATGGGACAGCGAGCCACTGCAAGTCTTTGTTGTGCCCCACTCACACAATGATCCTGGATGGCTGAAGACGTTTGACGACTACTACCGGGACCAGACCCAGCACATCCTGAACAACATAGTAGTGAAACTCCATGAGGACAGCCGCAGGAAAATGATCTGGTCCGAGATCTCATACTTCTCCAAGTGGTGGGACAACATCGACAACCAGAAGAGAGACGCTGTCAAGagTCTGTTTGAGCAAGGCCAGTTGGAGATCACAACGGGAGGCTGGGTGATGCCTGATGAAGCCAACTCGCATTACTTTGCATTAATTGACCAGCTATTGGAGGGACACCAATGGTTGGAGAGAAATGTGGGAGTGAAACCCCAGACGGGCTGGGCTGTGGATCCGTTTGGCCACTCCCCTACCCAGGCGTACCTGTTGAAACAGGCTGGCCTGGCCAACATGCTCATCCAGAGGGTGCACTACTCCGTCAAGAAACACTTTGCCAGTCAGAAGACCCTGGAGTTCTTCTGGAGACAGAACTGGGACCCAGCCTCCAGCACGGACATTCTATGCCACATGATGCCCTTCTACAGTTATGATGTTCCCCACACGTGTGGTCCCGACCCCAAGATCTGCTGCCAGTTTGACTTCAAAAGACTTCCTGGTGGGCGGGTCAGCTGTCCCTGGAGGGTCCCCCCTCAGCCAATCACGGATGGAAACGTACAACAGAGGGTTCAGATGCTGCTGGACCAGTACAGGAAGAAGTCCAAGCTGTTCCGAACCAAGGTGGTGATGGTCCCCCTAGGGGACGACTTCCGCTATGCAGAGGCCTTGGAGTGGGACCAGCAGTTCCAGAACTACCAGAAGCTCTTTGACTACATGAACTCTCATCCAGAACTACACGTCAAGGCTCAGTTCGGCACCATCACGGATTACTTCAACGCTCTTCGTAAATCGGCCATAGACCCCGGTCACGCTAGTGCCTCTTTACCGGTGGTCAGCGGCGACTTCTTTACCTACGCAGACCGAGATGACCATTACTGGAGCGGCTACTTCACCTCCCGACCCTTCTACAAACGCCTAGACCGCGTGCTGGAGTCACACCTCAGGGCAGCTGAGATCCTTTACTCCCTGACCCTGGCTAATATTCAGAGGTTTGGGAAGCTGAATGATTTCCCAGCTGTGGAGAACAACAGACTGCTCACTGAAGCCAGGAGGAACCTGGGCCTGTTCCAGCATCATGACGCCATCACAGGCACCGGCAAGGACATGGTAGTGATCGACTACGGTACCAGGTTGTTTCATTCCATTTTGAATTTGAACCAAGTGATTGTCAACTCCGCACACTGGCTGGTGTTAAAGGACAAAAGTGCATACAGTCACAATCCGTCAAAAGCCTTTCTTCAAATGGATGACATCCAGCCTTCTCAAGATGCCCTGCCTCAAAAAAACGTTCTGAAAATCAGCTCACAGCCTAGGTCTGTGGTCGTCTACAACCCCACGGAGCAGGACCGCACGTCAGTGGTGACCGTGTACGTGAACACGCCCCACGTGTGTGTGATCACAGACCACGGTCACCCCGTCCCCGCTCAGGTTAGCGCGGTCTGGGACGACTCCACCACAGCTTCCACAGAGGCCTTCCAGTTGTCCTTCGTAGCTCAGGTGCCAGCGCTGGGTCTTGGGCTGTACCAGTTGAGTACGGCTGTGAGCGGCGGGGCGGAGACGGCAGAGTATGTTTTCCTCAGGCAAGGCGGCGAACTATCCGTCAACATGAAGCACTTCACCGTCAACATCCCCCAGGACGCCTCCACCCCCCTCAGCATCCACAACCCCCACATCCAGATCTGGAGCTCCCCCACCACCGGCCTGATGGAGAGATTGAAGCTGAAAGAGAACGGCTCAGAACACCAGATCAAGGTGGAGTTTGCATGGTACGGCACAACCAGCAACCGAGATAAAAGCGGAGCCTACTTGTTCCTGCCCGACGGGGAAGCCAAGatgTACTCTCCCGCCCGGTCTCCAGTGATACGGGTAACCAAAGGTTCTGTGTTCTCTGAAATCACCACTACCTTCGATCACGTGACACACACTCTACGCCTGTATAACGTTCAAGgtgtggaGGGCCAGGCAGTGGAGATCTGTAACTTGGTAGATATAAGGAGGGAGTTCAACCATGAAATTGCAATGAGGTTAGCATCAGATGTGGACAGCAAGGATCGATTCTTCACAGACCTCAATGGATTCCAGATACAGCCCAGAAGAACCATGGCCAAGCTTCCCCTTCAAGCCAACTTCTATCCCATGACCAGCATGGCCTACATCCAGGACCCTGGTACCAGACTGACCCTGCTCACTGCACAGTCTCTGGGCTCCGCCAGCCTTGTGAGTGGCCAGTTGGAGGTGATTATGGATCGTCGGCTGAACCAGGATGATAACCGCGGGCTGGGCCAGGGTGTCCTGGACAACAAAGTTACCCCCAGCACTTTCCGCCTGCTCCTGGAGAAGAGGGCCAAGACCGATGGGGGGGAGAAACCCTCACCCCTCAGCTACCCGTCTCTGCTGAGTCACGTGTCGTCGTTGTACCTGAACCACCCTCTGATCTCCATGGCTGTCAGCACGGAGGCACAGTCCCTGTCCTTGTCCGCCTTCACCCCGCTGGCCTCATCGCTGCCCTGTGACATCCACTTGGTCAATCTACGCAGCATACAGTCCAAGGAGGACGGGGGTGGTCCGTCGGACGAGGCGGCTTTGATTCTGCACAGAAAAGGCTTTGACTGCGCCTTCTCCAATAGGAACACAGGGCTACTGTGTGCCACCACGCAGGGGAAGATCCACACGGAGAAGCTGTTTTCAGAACTGAGATTCCAGAGCATCATCCCCGTATCCCTGACTCTGATGCATACGACTGAGGGAGGGTCGAGCAAAGAGGAAATCAGACTGAAACCAATGGAGATCAGCACATACCGCGTGCAGCTGACATGACAGCTGGCCAGAGAGCCTAGTGCCTAGTCTGCCACGGCACATGCCCAAAATCTGGCCTCTGTTCCTGTGCCGAAAAACATTGTCAGCGAGGCTATGCAGAAGCCTAGGGACATAGTACATCCTTGGAACAGacggaaggagggaaagaggaagagagaaagaaggagagagggaggaggattaggaaggagggaggaggggaagaaaggaggagaaggaaatGGAACTTGATTAAGCTTCATTTTAAAAGTGCAGTATGATATTGTTTGAATCCAGTATCCCTAGTTATCCTGCAGTTTCAGGTTCTGTATGTGTTGTGAAGGTTTGTGTTGCAATTTCACTTGAACTCACTCTACTGAGAAGACCACAGGTCCACATTTCCTTTTCCACTAATATGATTTTGTACAATGTGATTCCTTGTCTTGTTTTACCAAGGTATGGTTTCAATCATAGTGAATATTGCTTAATGTCCTTGGCATGCCGAAAAAAAGATTTGAACGACAACTGattctaaatatata

Function

GO:

id name namespace
GO:0006013 mannose metabolic process biological_process
GO:0004559 alpha-mannosidase activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01231 MAN2; alpha-mannosidase II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1187649 lncRNA downstream 262678 15511196 ~ 15543997 (-) True G1042179
TU1187645 lncRNA downstream 301806 15504369 ~ 15504869 (-) True G1042175
TU1187613 lncRNA downstream 308723 15497500 ~ 15497952 (-) True G1042150
TU1187581 lncRNA downstream 363513 15442857 ~ 15443162 (-) True G1042121
TU1187575 lncRNA downstream 370636 15435545 ~ 15436039 (-) True G1042116
TU1187865 lncRNA upstream 118829 15975853 ~ 16004742 (-) True G1042386
TU1187890 lncRNA upstream 132886 15989910 ~ 15994023 (-) True G1042409
TU1187908 lncRNA upstream 155203 16012227 ~ 16012762 (-) False G1042425
TU1187907 lncRNA upstream 155444 16012468 ~ 16012762 (-) True G1042425
TU1187911 lncRNA upstream 156383 16013407 ~ 16013704 (-) True G1042426
XM_021622764.2 mRNA downstream 12844 15782631 ~ 15793831 (-) True LOC110537049
XR_002475864.2 mRNA downstream 34924 15760264 ~ 15771751 (-) True LOC110539118
XM_021622763.2 mRNA downstream 48806 15722857 ~ 15757869 (-) True LOC110537048
XM_021622760.2 mRNA downstream 87702 15708567 ~ 15718973 (-) True LOC110537047
XM_021622762.2 mRNA downstream 89487 15708567 ~ 15717188 (-) False LOC110537047
XM_036937029.1 mRNA upstream 22395 15879419 ~ 15908125 (-) False LOC110537052
XM_021622770.2 mRNA upstream 22395 15879419 ~ 15920247 (-) False LOC110537052
XM_036937028.1 mRNA upstream 22395 15879419 ~ 15920248 (-) False LOC110537052
XM_036937030.1 mRNA upstream 22395 15879419 ~ 15920248 (-) False LOC110537052
XM_036937031.1 mRNA upstream 25190 15882214 ~ 15920255 (-) True LOC110537052
TU1185711 other downstream 1495623 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 1626534 14178658 ~ 14180141 (-) True G1040300
TU1184637 other downstream 2450880 13355300 ~ 13355795 (-) True G1039504
TU1184605 other downstream 2483959 13321210 ~ 13322716 (-) True LOC110536986
TU1184467 other downstream 2654368 13151021 ~ 13152307 (-) True G1039366
TU1187996 other upstream 247139 16104163 ~ 16104883 (-) True G1042500
TU1188176 other upstream 467939 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other upstream 467939 16324963 ~ 16328114 (-) True LOC110537059
TU1188573 other upstream 676593 16533617 ~ 16544726 (-) True LOC110537061
TU1189216 other upstream 1208297 17065321 ~ 17067885 (-) False LOC110537077

Expression Profile