RNA id: TU1188573


Basic Information

Item Value
RNA id TU1188573
length 382
RNA type TUCP
GC content 0.52
exon number 3
gene id LOC110537061
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16417638 ~ 16549073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGGAGAGAGGGCCTGGAGTGGAGACATGACATGATGGAGAACTGCCACTATGTAGGATACCTGCAGGATCAGTACAGCTCCACCAGAGTAGCGCTCAGTAACTGTAAGGGCTTGCACGGTGTTATTACAACAGAAGAAGAACAGTATTTAATAGAGCCACTCAAGAATATATCCTCCACAACTTCCAGCCAATGGGACCAGGGAGAAGGACAGCAGCATGTTATATACAAAAAGTCTTCCATCCCCTCGCCGCGGCAGCAACCCAGCCAACACGAGTTCAGCTGTGGCATCTCAGACCTCACAAAAAGCGGGAGCCCCTGCCAACATAGCACTCCTTCCCCAACCTCTCcaacctcctcctctcactccttctctccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188536 lncRNA downstream 43017 16488923 ~ 16490600 (-) True G1042955
TU1188303 lncRNA downstream 117151 16416205 ~ 16416466 (-) True G1042754
TU1188302 lncRNA downstream 119122 16413450 ~ 16414495 (-) True G1042753
TU1188294 lncRNA downstream 129925 16403461 ~ 16403692 (-) True G1042745
TU1188271 lncRNA downstream 154254 16379161 ~ 16379363 (-) True G1042722
TU1188604 lncRNA upstream 52988 16597714 ~ 16598284 (-) True G1043015
TU1188606 lncRNA upstream 53732 16598458 ~ 16598766 (-) True G1043017
TU1188611 lncRNA upstream 59486 16604212 ~ 16604439 (-) True G1043022
TU1188615 lncRNA upstream 63786 16608512 ~ 16608845 (-) True G1043026
TU1188617 lncRNA upstream 65377 16610103 ~ 16611141 (-) True G1043027
XM_021622782.2 mRNA downstream 205449 16324956 ~ 16328168 (-) False LOC110537059
XM_021622783.2 mRNA downstream 205449 16324956 ~ 16328168 (-) False LOC110537059
XM_021622775.2 mRNA downstream 208855 16320428 ~ 16324762 (-) True ppwd1
XM_021622776.2 mRNA downstream 209060 16320428 ~ 16324557 (-) False ppwd1
XM_021622778.2 mRNA downstream 221271 16307357 ~ 16312346 (-) True mzt2b
XM_036937045.1 mRNA upstream 24760 16569486 ~ 16576847 (-) False LOC110537062
XM_036937046.1 mRNA upstream 24760 16569486 ~ 16576847 (-) True LOC110537062
XM_036937052.1 mRNA upstream 71641 16616367 ~ 16625697 (-) False LOC110537069
XM_036937054.1 mRNA upstream 71641 16616367 ~ 16630117 (-) False LOC110537069
XM_036937051.1 mRNA upstream 71641 16616367 ~ 16630120 (-) True LOC110537069
TU1188176 other downstream 205503 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 205503 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 428734 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2222565 14307600 ~ 14311052 (-) True G1040432
TU1185574 other downstream 2353476 14178658 ~ 14180141 (-) True G1040300
TU1189216 other upstream 520595 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 520595 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 1151403 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 1473378 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 1511385 18056111 ~ 18058392 (-) True G1044671

Expression Profile