RNA id: XM_036937046.1


Basic Information

Item Value
RNA id XM_036937046.1
length 2672
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110537062
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16569486 ~ 16576847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTAGGCGTTCCCTGTGTAGCGTGGACAGCATACCCTCTTGTCGGCTGATAATTCTCGTTGACACTTCGTCGGAGAAAATGGCGGCTGGAGTGAGACAGGAGCTTGCACAACTTATGAATTCAAGCGGATCTCACAAAGATCTCGCTGGAAAATATCGACAGATTCTGGAGAAGGCCATCCAATTCACAGATGCAGAACAATTGGAATCATTAAAAGCATTCGTCGAAGCAATGGTCAATGAGAATGTCAGCTTAGTGATCTCTAGACAGCTGCTGACAGACTTCTGCACAAACATACCCAGTCTTCCTGACAGCACAGCCAAGTCAGTTTACCACTTCACACTAGAGAAGATACAGCCCAGGGTCATCTCATTTGAAGAACAGGTGGCCTCCATCAGACAGCACTTATCCACCATCTATGAGAAGGAGGAGGACTGGAGAAACGCTGCTCAGGTTCTAGTGGGCATTCCTCTGGAGACAGGACAGAAGCAGTACAACGTAGACTATAAGTTGGACACGTACCTGAAGATCGCCCGTCTGTACCTGGAGGATGATGACCCTGTTCAGGCCGAGGCCTACATCAACAGAGCCTCGCTGCTCCAGAACGAGTCCACCAACGAACAGCTACAGGTCCACTACAAAGTGTGCTACGCCAGAGTGTTGGACTACAGGAGGAAGTTTATCGAGGCTGCACAGCGGTACAACGAGCTCTCTTACAAGTCCATTGTCCACGAGACAGAGCGTCTAGAGGCCCTGAAGCACGCTCTTCATTGCACCATCCTGGCATCAGCAGgCCAGCAGCGCTCCCGTATGTTAGCCACCCTGTTTAAAGACGAGCGCTGTCAGCAGCTGGCGGCCTACGGCATCCTAGAGAAGATGTACCTGGACCGCATAATCAGGGGGAACCAGCTGCAGGAGTTTGCTGCCATGCTTATGCCCCACCAGAAAGCCACCACTGGGGATGGCTCCAGCATATTGGACAGGGCTGTTATTGAACACAACCTGCTGTCTGCTAGCAAACTTTACAACAACATCACGTTTGAAGAGCTAGGGGCGCTTCTGGAGATCCCTCCCGCTAAGGCTGAGAAGATCGCCTCCCAGATGATAACAGAGGGACGCATGAACGGCTTTATTGACCAGATAGACGGAATTGTCCACTTTGAGAcacGGGAGCCCCTGCCCACCTGGGACAAGCAGATCCAGTCTCTATGTTTTCAGGTGAACAACCTGCTGGAAAAGatcactgctgctgctcctgAGTGGACAGCCCAGGCCATGGAGGCTCAGATGACCCAGTAGACTGACTGACAACCCCTGGCCTGGAACACTCCACATGACCACCCACACCAGGCACACCACCTGGCCTGGAACACTCCACATGACCACCCACACCAGGCACACCCCCTGGCCTGGGACATCTCACATGACCACCCACACCAGGCACACCCACTGGCCTGGGACATCTCACATGACCACCCACACCAGGCACACCCACTGGCCTGGGACATCTCACATGACCACCCACACCAGGCACACCCACTGGCCTGGGACATCTCACATGATCACCCACACCAGGCACACCCACTGGCCTGGGACATCTCACATGACCACCCACACCAGGCACACCCACTGGCCTGGGACATCTCACATGACTGGGCACACCCCCTGGCCTGGGACATCTCACATGACCACCCACACCAGGCACACCCCCTGGCCTGGGACATCTCACATGATCACCCACACCAGGCACACCCACTGGCCTGGGACATCTCACATGACCACCCACACCAGGCACACCCACTGGCCTGGGACATCTCACATGACTGGGCACACCCCCTGGCCTGGGACATCTCACATGACCACCCTCACCAGGCACACCCCCTGGCCTGGGACATCTCACATGAACACCCACACCAGGCACACCCCCTGGCCTAGGACATCTCACATCACCTCACACACCAGGGCACACCTGGCCTGGAATACCCCACACACCAGGGCACATCTCacatggcaccctactccctattcaCTATGGAGGGTGCGATTTTGGCTGGGTGGCTGGGCTAAGTGCGAAGTTTTGTAAGATCGTACTGTACTGAAGACTGCAAACACGAAATTGTTCAGTTGAAACCAGCTGAAGCCAAATTCTGTTGTATTTTGGCAGGGGTTAATAGAGCTTAGCCGAGCGCCTGGCCTTAGTAgtggtaggggaaacactggccACTCCtccccacattctctctctctctctctctctctctctctctcactgtctcgccCATTTAAGTGTGAGACATGTTCCAATCTGGTACTTCTCTAGCATGTTTCTCAGAAGAAGTCTGCTGTATATTATGCTTGGAGTTTACCATTCATCTTTCTAGGACTAATAAATGGATACTTGAATCCATAGGCTCATCAAGTTACCAGTGGTTGCAATCTCATATATACTTTGATTTCATGTAATACAAACCAGAGAACGTAAACACTGATGTCCCACAACTAAGGTGTTAGTGATTTCTATTTGAAATGTGAAAGACACACAGGCCATGCCTACCGCCACTTAATTTGTTGCTGTATTCTTGTACAATGATTTTGTTACATTCTGTTTGGAAACATTTTGTCAGACCTGGAGTGCAACTTCAACAAAGAGATGAATAAATGAAAAAAGAAG

Function

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12178 COPS4, CSN4; COP9 signalosome complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1188536 lncRNA downstream 78886 16488923 ~ 16490600 (-) True G1042955
TU1188303 lncRNA downstream 153020 16416205 ~ 16416466 (-) True G1042754
TU1188302 lncRNA downstream 154991 16413450 ~ 16414495 (-) True G1042753
TU1188294 lncRNA downstream 165794 16403461 ~ 16403692 (-) True G1042745
TU1188271 lncRNA downstream 190123 16379161 ~ 16379363 (-) True G1042722
TU1188604 lncRNA upstream 20867 16597714 ~ 16598284 (-) True G1043015
TU1188606 lncRNA upstream 21611 16598458 ~ 16598766 (-) True G1043017
TU1188611 lncRNA upstream 27365 16604212 ~ 16604439 (-) True G1043022
TU1188615 lncRNA upstream 31665 16608512 ~ 16608845 (-) True G1043026
TU1188617 lncRNA upstream 33256 16610103 ~ 16611141 (-) True G1043027
XM_036937044.1 mRNA downstream 20413 16417638 ~ 16549073 (-) False LOC110537061
XM_021622782.2 mRNA downstream 241318 16324956 ~ 16328168 (-) False LOC110537059
XM_021622783.2 mRNA downstream 241318 16324956 ~ 16328168 (-) False LOC110537059
XM_021622775.2 mRNA downstream 244724 16320428 ~ 16324762 (-) True ppwd1
XM_021622776.2 mRNA downstream 244929 16320428 ~ 16324557 (-) False ppwd1
XM_036937052.1 mRNA upstream 39520 16616367 ~ 16625697 (-) False LOC110537069
XM_036937054.1 mRNA upstream 39520 16616367 ~ 16630117 (-) False LOC110537069
XM_036937051.1 mRNA upstream 39520 16616367 ~ 16630120 (-) True LOC110537069
NM_001165148.2 mRNA upstream 60643 16637490 ~ 16638951 (-) False LOC100305243
XM_036937061.1 mRNA upstream 363580 16940427 ~ 17024994 (-) False LOC110537074
TU1188573 other downstream 24760 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 241372 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 241372 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 464603 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2258434 14307600 ~ 14311052 (-) True G1040432
TU1189216 other upstream 488474 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 488474 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 1119282 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 1441257 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 1479264 18056111 ~ 18058392 (-) True G1044671

Expression Profile