RNA id: XM_036937060.1


Basic Information

Item Value
RNA id XM_036937060.1
length 9763
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC110537074
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16940427 ~ 17041905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCATACAACCACGACCTGGTAATTTGCTACGTCATTTTCCAATAGAAGGATAATGTTGCACATGACTTTGTTTTGGCTGTCAATGAACGGTAGAGTGAGCCGGGAGGAACATAAGCAGTCCGCTTTATTCTCAAAGGGGATACAGCAGGCAGACATCcaaataaatggaatggcattCAGACTAGAAAAGCCGGACAAATAGTCTATGTCAAAGGAACTTCATGTAGAGGTCTTGGGATAGATAGTCTTCTTTCTGGTGCCAGTCGTGGTCAGGCAGACAGTAAAGGGACACTCAATGCGTTGACGGCAGTGCCGCTATTGGAGCAAAAGACGTGGATGGATGCATAATTATTTGCAAATTTGCTGGGTTAGCTTGCTAAATTATAACCTGACGTTTTATTTAGGTGTCATTGGTTATAGTTAAGAAATTTCTTAGCCAATAAACTGTGTATTTGGACAAATTCCAGGAAATCCAACAGCGCATTGGAAGAATGCAGTGAGGAGTTTCCATCACATTGCTGGTCTGAACCATAATGTGTTCCATCCCAGCTGTTTGATGATGCTGCTGCTTGGGTAGAGCGGCTCGTTGAGACGACCCTCTGCCCCCCCCCGTGCCACCCCACCACCAAGCTACCATGCTGATCAAGGAGTACCGGATCCCCATGCCTATGAGCGTGGAAGAGTACCGCATCGCCCAGCTCTACATGATCCAGAAGAAGAGCCGAGAGGAGAGTTGTGGTGAGGGTAGTGGGGTAGAGATCCTAGAGAACAAGCCGTATGAGGATGGTCCAGGCGGGTCGGGTCAGTACACACACAAGGTGTACCACATCGGGAAACACATCCCCTCATGGTTCTGCTCCATCCTGCCTCAGGCTGCTCTACGCGTGGAGGAGGAGTCCTGGAACGCCTACCCATACACACGCACACGgtATACCTGTCCATTCGTAGAGAAGTTCTCCATAGACATTGAGACGTATTATAAACCTGACACAGGGACCCAAGAGTGCTTCAATCTGTCATCAGCAGACAAAAGAGCGAGGACTGTAgACCCCATTGATATTGTGAAGGATTACATTGCGCCCCATGAGTACCTGGTTGAGGAGGACCCTAAGCTGTATGTATCGGTGAAAACCCAGCGAGGACCACTGACTGACGACTGGATCGAAATGATCAACCAGAACCCCACCCAGAACCCGGTCATGTGTGCCTACAAGCTCTGCAAGGTGGAGTTCAGATACTGGGGCATGCAGTCCAAGATAGAACGCTTCATACACGATGTTGGCCTGCGTAAGGTGATGGTGCGTGCCCACCGGCAGGCGTGGTGCTGGCAGGATGAATGGTACGGTCTGACCATAGAGGACATCAGACAGCTGGAGCTGGAGACCCAGCTAGCCCTGGCCACGAAGATGGCCCAGTACAGCCTCAGTGACACCGAGGAGGGGGCAGCAGAGTCCAACAGGACCCCCGTTACACCTGACCGGGACTTGGAGGGGGCCCTGCGGGacgggggagaggtggagggtggaggggcaGGGCTGGGAGATACGTTACATACGCGTGGAGAGCTCACCAAGCAGTGGTCAACTTCGTCCAGGTCGTCTAATAGATCCTCGAAGAGAGGAGgaagtcctGTAAACCAGAACATCTCAGAGTGGCGGATGCAGAGTATCGCTCGTGACTCAGAGGACAGCACTGACGACGAGTTCTTCGATGCTCCCGAGGACTTCTCTGGAGATGAGGAGATGTTATTACATGCCAAGGAGATGAACAAGTGGAGTTCCAACGACCTGATGGACAAGATAGAGACTACAGAGACAGACGAAGGCCAGgAGAGCCTGTATCAGGAGTCGGGTGAAGACTATACAGTAACCAGTAGTGAAGAACGACTGATTGAGGATGGGTCGTCTCAGCAGTGTCTGACGCCCTCCAAGATCCacgttctggttctggttcttcaTGGGGGTAACATATTAGACACTGGAGCAGGTGAGCCAAGTAGTAAGCAGGCTGACGTCAACACTCTGAGTGGAGCATTTGAGGCTGTGATGAGAGTGCATTACCCAGCAGCCCTAGGACGCATTGCCATCCGCATGGTTCCCTGCCCGGCGGTGTGTGCCGATGCCTTTTCACAGGTTTCCAAtcTCAGTCCCTATAGTTTTGATGAGGGCTGCCTTTCCAACAGTCAGGACCACATCCCTCTGGCTGCACTGCCTCTATTGGCCACTTCCGCTCCGCAGTACCAAGATGCCGTGGCAACCGTCATCCAAAGAGCCAATCAGGTGTATGGAGACTTTATCAGGTCCTTGGAAGGGGCATCCTTCTCCGGACAGGTGTGTGTGATCGGGGACTGTGTAGGTGGTATCCTAGGGTTTGATGCGCTGTGCAGCAGTAACGTCATCGTTTCAGAAAGCCAGAACAGCAGTAGACGAGGCAGCACCGTCAGCGTACAGGACACAGACCGCCTCTCCCCTGGCATCATAAtaaacagtgtctctctgtcttctccgtCTTCTCCGACTCTGGAGGGCAGTCGCCATCTTAGTCGCAGTAACATTGACATCCCTCGCAGCTCAGGGCCTGACGACCCCAAGAGAATGCTGCCTCGCAAACGCAGCGACTCCTCCACCTACGAACTAGACACCATCAAACACCACCAGGCATTCCTGTCCAgtCTCCATAGCAGTGTATTGAGAACAGACTCAGGTTCGAGGCGCTCCAGCGGGAGTACCAtgctagagggagggaggctggactTCGAGGTGGCAGACTTCTTCCTCTTTGGTTCACCTCTGGGGCTGGTGCTGGCACTGAGGAAGACTGTGGTGCCGTCCATAGATGtctcaGCGTTGCGTCCGGCCTGTCAGCAGCTATATAACCTGTTTCATCCAGCGGACCCCTCTGCCTCCCGCCTGGAGCCCCTTCTAGAGAAGAGGTTTCACCAGCTGCCCCCCTTCTGTGTCCCCCGATACCAACGCTTCCCTCTGGGGGACGGACACTCTGCTCTGCTGGTGGAGACTATGCAGAGTAACCCCCATCTCCTGTTGGAGTCAGTACCCCTGCGTTGCCAGGAGGGGGGCGTCAGTGAGACCTCCATCCCCGTCCCTGTACGCAGCTGGCCCCAGCAGGCCTCACAGCTCAACAACACGGACATGTTTGTGGACACCCAGTACCCGTCCTCCCCGCTGACTGGACCCCGTAGGTCCAGTGAGGCCAGCATCGCTAGCCAGGTGTCAGGCATGGCCGACTCATACATCAGCAACACTACTAAACGCTATAGCAGTTCGTCTAAGAAGCTGGGTCTCCTCTCCCAGCTTGCGCTTTCTAAACTCCCCTCGAGGAGCCCCTCTCCACGAGCCAGGAAGAAGATACGACCCTTCCTCACTCTCAGACACACCGACTCAGAGCAGGGTGACGATGATGTCACCTCTGACATCACTTCCTCTGATGTCTCCTCAGACCTGCCCTCTGACTTCACTGAAGTCACCTCTGATGTCACCTCTGACATCACCGATACGAACTCTGACCCTCCGTCGCCAGATACGCTGATGGACATAGAGCAAGttGCGTCTCGGTGGTGGGGCAGCAAGCGGATGGACTTTGCCCTGTACTGTCCTGATGCCCTCACCGCCTTCCCCACTGTAGCTCTGCCtcacctcttccatgcttcataCTGGGAATCTACTGACGTTGTCTCCTTCCTACTCAGACAGGTGATGAGGCATGAGAACTCTAGTATTCTGGAGCTGGATGGTAAAGAGGTGACCGAGTTCAAGCCTTCTAAACCCAGAGAGAAATGGCTGCGCAAGAGGACACACGTCAAGATCAGGaacgTTACGGCCAACCACCGTGTGAATGATGCTGTGTTCACTGAGGATGGAACACAGCTGGTGATGGGACGCTTCATGTACGGACCTCTGGACATGGTCACTCTCACTGGGGAGAAGATTGACATCCACATCATGACCCAGCCCCCCTCAGGAGAGTGGATGTACTTTGACACCGAGCTGTCCAATAGCAGCGGACGGATCTCCTATGTCATCCCAGAGAGCAAGAGGCTGGGCATTGGAGTTTATCCTGTCAAACTGGTCGTCAGGGGTGACCATACATTTGCGGACAGCTACCTGACGGTGTTGCCGCGGGGAACAGAGTTTGTAGTGTTCAGTATTGACGGCTCGTTTGCTGCCAGTGTGTCCATCATGGGAAGTGACCCCAAGGTCAGAGCTGGAGCTGTAGATGTGGTCAGacaCTGGCAGGACCTGGGCTATCTGATAGTGTATGTGACAGGTCGTCCAGACATGCAGAAGCAGCGTGTGGTGGCCTGGCTGTCTCAACATAACTTCCCTCATGGCATCGTGTCCTTCTGTGACGGCCTGGTCCACGACCCCCTCAGACACAAGGCCAACTTCCTCAAGGCCCTCATCTGTGAGgcccaTATGAAGATCTTTGCTGCTTACGGCTCTACTAAGGACATTTCAGTGTACTCCTCAATAGGCCTGCCCCCGTCCCACATCTACATAGTGGGGCGGCCCACCAAGAAGATGTCCAGCCAGTGTCAGttcatccCAGATGGCTATGCGTCTCATCTCTCCCAGCTGGCGTACAGTCAGAGGTCTCGTCCTGCCAAGACCGCCAGTGCCCGTATCGTCCTCCGTAAGGGCAGCTTTGGACTGGGCGCGGCCGGGGGGGACTACCTCCGCAAGCGCAACCACATCCTGCGCTCAATCAACCCAACTGGGGGGGGGGTTTCTAGCTCCTCTGGCCAACCAGGACGTACGGAACGCACGCTGAGCCAATgcgaggtggagagggagaaatCAGCGGGGACCCAGAGGAGTATGAGTATAGCAGCTGGGTGTTGGGGCCGCACCGGGAGCACCAAGGAGGAGTCAGGAGGGTTACTCAGCCCTAAGTAGGGCTCACCAGACTGGGCTACAGGGGGAGGGGACCCTGCCTGACTGGACATGAGCACCATCTCTGGACTggccctgagagagagatggacagaggagGAAAtatggtgagaaagagagataaagacaatTATGGGATGAAAGAGGGGAGGGATAGGGTTaacagagggatggaaagagagatggagagagagggaaaagggcaGAGAGGGTCTCTGGGGAAGTGGATATAAAGCCAGAAAGATGGGTGTTGCTCTAACTTTGATGTACATTTTCTAAAGACGTTTCTACTGTGTCATGAGAGTCTCACAGTCAAGACTTTTATATTACCTATCTTGGCCACGAAAAGAACTGTAAGGAAAAACGAAACATTTAAACAAACTATCGTAAGCCTTAATCGTTGCCCCCTTCGGGCCTGGAAGGCCCACCCTGGTCCGAGGAATGGTTGAATTTACTCTCTGCATCTAAAGGACAATGGGAATTCACAACCACCCCAGCTCAGGACAGGCGCAGACAGTGGAACCATCAAAAGAAGTGTCAATGTTGACCTGGAGGTCAGGGTGGTCAGTTTGTAGCCATGGCAACACGCCAACAACTTCACCTCTGATTTTATCCCTTTATCTTCGCTGAGATACTGTCAACTAAGAAGCACCATTACCCTAAAGAAAGAttgagggaagaggagaagaaagagggagaaggataCATGGAAAGAGGGTAGATACAGTGAGAGAGGCAAggcaaaagagagggaggggcaaGGTTATGTATGAATGAGGTGTAGAATTTCCCTCTAGTCTCTATTTTCCTCTACTGTTTTCAGTGTGGTACTACACAGTGATTTGTACTGTCAACGTTGGCTCCGCTCCAGTCCTTTTAAGTCAATAACAGAGTAGCTACAGTACCAGTACCATGTATCTCAGTTTGGCCTGTGGGCTGTCCCAGGCCTTAAACACCAACGACATGTTTATGAGTCAGACTCTGAAGGAACCCAGGACTGAGCTTAATAGGGCTTGGCTTTGATATAACAGAAGACATTAGTGACACATTTCCTCAGACAGATAACAGCAACAATCCCTTTACCAGACCATCTGCTTGCAATACCTTTGAGCCACCAGTGGTGGGCACTCTCCCACTCTGTTTTCCATAAGCATGATGCTGTTGGTAGTCATTCAGTCCATCATGTCGCGCCCCCTAGCGCTCAACGTGTGTCATTACACACAATTCAGTGACCACTGGACTTCCCTATGATACTCTGAGGAGTCTGAGCTCTTTCATTCTTGAGGGATGGGATGAATGCTATTCATTAGACATTACTACATTTCAGTCTGGATAAAGACATGCTTTGATTACACTTTATTTTACAGTTCCCCTATCCTGTTTCAGTTTACCTGGTAGTAATACCTCATGATAGACGCCTGCTGATACCAAGTTGTTTCCAACTGTGATTAATTATCTGAAGTACCAGAGACTATACAATGTTATTCCTTAGCAAATACCAGCTGTCATAGGACTGTAGAATAAAGTGTTACTGATACTTTGACTAAATCTATGGCAACCTGTACACAAAATGAAAGATGAACACCTAACAGAGAAGCAGTAGTAGGGTTGCACCCTTTTCTATCATACTGTCCTGTTGTCTGGCTCCTACTGGTTAGATATTGATATGAGAGAGTGTTCCTTTATCCTCCACTTCAAATATATTCCCATTACTAATCACACAAAGCCAACGCAGGGCCAAAACACCAATCTCTCTCTTAACGGCTGCAGTATCTCAACCTGTTCAACCTCGTTGTTCGTAGCACTAGTTTATGGCGGAGAATCTAGTTACCATCTCATGTAGCTACATATTGTTACCTTTGTAGTGCATGATATAATAACTATTCATTATTGCAGGGTATGTGTGCTACAGTACTTACACTcgtgtacattttttaaatgtcaggATTACTTAATAATGTAAGTAAATGTGCCAAGAACAAGACAGTTGTTGGTTAGGTGTGGAAAGATAATGTACCAGGCTGTATCCAAACTTTCCTTTGTGCTGTGTATGTTGCATTGAGATCATGGCGGCGTGGCTTTAACTAAAAGGCTGTgctgttatatactgtattttacagaTGTAAATCAGATTAGATCTATGAATTTGTAGATATGTTTTAATCCAACATATTGTCCATATCTAAGTAAAGGACATAATTGCTGAAATAGGATGTGGTTATGGTTTCACTTATGACTTGAGCGCTTGTAAGCTCTAGCATGTTGCTTTGATTCTAGGGACACTATTGTCAACTAcagtagggtggcaggtagccaagcTGTCAGAGTATTGGACCAGTAACTAAACGTTTGCTGGTTTTAATAACCTAggctgacaaagtgaaaaaaatcCCTTATAAAACAACTCATTTGACCAATGTGGTGGGATgtagggatacctagtcagttgtccaactgaacaTAGCTTCCGGAttaacccaactcctctgaatcagagaggtgcgaaaggctgccataattgacatccatgtcttcagcacccggggaacagtgggttaactaccttgctcaggggcacaaagacagatttttaccttgtccactcagggattcaatccagcatccttttgtttactggcccaacactaatcACTAAACTACCTGCCTCCCtatgtatgtgacaataaaacaccCTTGTATTGTCAACCTAAATGGAAGGTTTGATTTATTGCTATCtgttatacaacgggtgggtctaatactgaatgctgattggcttagGTGAGGATTGTTCATGTGATTAAAGCAATAGTTTTTGTCAGACATTGATCAgaccaaaaaaataataatctagtCTAATGTCAAGTCCATTTGTTGTGTACAGTAGTTCTAGTTACCTAAGGACACTTTTgaggtctttaaaaaaaaacggtTGGAATTTGGTTCTGCAGTGAGGTAGCTGTAGCTGATTGGCTGGAAGACACTGTGAGGTTTTAGATACAGCCATACTGTTCCCCTCTGGCCTGTGGGTTGGTGATGATGAGCTAGTGGAATGTCCTCCTGCTACAGAGCTGGAGAGCCCAGACTGTACAGGAGCCatggatgtctgtctgtcagtcagtgtagataaggTCAAAATGACACTGTATATGTAGGAATATAATGGTTGAGAGGTATTTATTTACATAACTCATGTGGTTACTTAATATGATGGATCTTTCAGGTGAATAGCGTTTTGTTTATGATGACGATCTAGTTGTGAATAGGAGGACCAACAGTCAGTGGAAGGTGTTTGTTTTCTTAGCCAGTGCAATATTATTATTGTTCCAGTCGCAGAACCAcaagcagacacagacacagacagtcagaGACCACAGCAGAGACAATCTATATATTATATCTAACATGCACGAGCATAGACAACATAGACAACATCTAGTTCTACTGTCCTGCCCCTTCACACGTCTACTGTCCCTTTACAAAGGTTAACTGTTACGATTTTATAGTGCAAACAAAACTATTTTTCAAACCGGCAAAAGTCTTTGACAAAATACTGTATTGCTTCCTATCGTGTGTGAAGGTATATTTTTTAGTCCGAATGAAGAAGTGGTTGAATGTGAAACTCCACCCGCTATTTGAATTGTATTAGGTGGTGTTCATCATTCAGACTGGGTTAGCCCtcaatactgtatacagtatgtatatatcaGTTATGTTAACCACTTAACCGTACAGTATGTCGTGAAATAGAAATGTATGTCAGAAAAAAACGACTGTTTATATTTGAGAATATTACAATTATTGCCACTTTAGTAGCAGTCTTGCATGTACTCCTATTAGATGTCAGTGTACACAATGTACAGGACATGTTCTACTGTATGGGGCTGAAATCTTATTAATAGttctacaccttgtagagttaCAGGTAAAACGAGAACTATATAACAATGTGTTCCGTCTGTTCTGTACTAGcattccactccttgtcatgACAACAATTTATTTTATGGTTGGCATGGCAAGGAGTAATGTaaaccttttttgggggggggtgggggttagTTAATGCTTTTTACTAAGGAGTGTAATAttagcacaaacagactgcaTTTCAGGCTAACAATGTGTACTTACACTGTACCTGCTTATGTAGCTACCACGTAAATACATAGATTTCTGAATACTTATGCTGTAAAGTGGGACCAATATATTTAGctacaatacagtacatacataaaatgtatgtcatttactcaagtattaataatataaaatgtacACAAGCTTAACATGATTATATCCATTAACAGATTGGGAATTTTTGTACAGTATTAGTACAATACAGTAATGGCATATACTATCACtctaaatatatagatatatagggGTAACATATACTGGTTGAGGTGGCaataatttaattgtattttgaTTATATGCAGTTTATTGGACATAAAGGTAGAATAGTAATGATATAATGCATATTTGAATTTGAAGGCATGTACATAAATGAAATAGTGTTCTGTACCTCTTACAATCTCATCCATTTCCCTTTGTAGCAGGTCTGAATTTCAAATGGTTTCAGATAGTTTTTATATCTGACAGTTTATCATGGTTTTCTTTTACAGAAAAACAAAACATCATCAGCATTCTTAGGCAAGGCCGTAAGACGTATACTTATGTACTTGAAGTGGCACATATTTGAAACACCTCCAACATCAGATCTGTATGCAGATCCCTcactgctcgctctctctctcctctggttcaTAGCTCACTTTGAACCTTCGAGGGTGAGAGCTCGCTGTatcattgtctctgtactgtggAATAAATACAATTGGAAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1189159 lncRNA downstream 15284 16923503 ~ 16925143 (-) True G1043488
TU1189153 lncRNA downstream 24756 16915326 ~ 16915671 (-) True G1043482
TU1188835 lncRNA downstream 57020 16882734 ~ 16883407 (-) True G1043218
TU1188776 lncRNA downstream 77835 16858842 ~ 16862592 (-) True G1043166
TU1188749 lncRNA downstream 135220 16796886 ~ 16805207 (-) True G1043143
TU1189234 lncRNA upstream 11675 17053580 ~ 17054356 (-) True G1043548
TU1189239 lncRNA upstream 17295 17059200 ~ 17085772 (-) True G1043550
TU1189231 lncRNA upstream 35884 17077789 ~ 17135064 (-) True G1043545
TU1189271 lncRNA upstream 97266 17139171 ~ 17139473 (-) True G1043577
TU1189281 lncRNA upstream 114047 17155952 ~ 17156375 (-) True G1043584
NM_001165148.2 mRNA downstream 301476 16637490 ~ 16638951 (-) False LOC100305243
XM_036937051.1 mRNA downstream 310307 16616367 ~ 16630120 (-) True LOC110537069
XM_036937054.1 mRNA downstream 310310 16616367 ~ 16630117 (-) False LOC110537069
XM_036937052.1 mRNA downstream 314730 16616367 ~ 16625697 (-) False LOC110537069
XM_036937046.1 mRNA downstream 363580 16569486 ~ 16576847 (-) True LOC110537062
XM_036937062.1 mRNA upstream 466 17042371 ~ 17064591 (-) True LOC110537073
XM_021622834.2 mRNA upstream 23336 17065241 ~ 17067146 (-) False LOC110537077
XM_021622835.2 mRNA upstream 23336 17065241 ~ 17068020 (-) False LOC110537077
XM_021622828.2 mRNA upstream 26276 17068181 ~ 17098190 (-) False LOC110537076
XM_021622829.2 mRNA upstream 26276 17068181 ~ 17098190 (-) False LOC110537076
TU1188573 other downstream 395701 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 612313 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 612313 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 835544 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2629375 14307600 ~ 14311052 (-) True G1040432
TU1189216 other upstream 23416 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 23416 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 654224 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 976199 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 1014206 18056111 ~ 18058392 (-) True G1044671

Expression Profile