RNA id: XM_036937062.1


Basic Information

Item Value
RNA id XM_036937062.1
length 5219
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110537073
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17042371 ~ 17064591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTTGGCCAATTAGACACTGCGTAATGTTTTGCCATTGAACATTGTGCTGCAGCACTGCTAGCCCGAGTAAAAACTACATTAGCTGCAGTAGACTAGCTGGCTAGTATTGCTGAGAGGCAATATGGGTGAAGTTACGTTACAAGTTAAATGGTATCATACTCTTCCCCAGGTCACGAGTCCATAAGCATGTCCACAGATGACAGTATCTCTGAGGATGTTTCAAGCCTGAGCCACTGCCTTGGCGATGCCAACGGGGAAGGGGGCAAGGAGAGTGAGTCCTCAGAGGGCACCTCAGCAGCCTCGGGTCTGGGGCTTGGGTTGGGGCTAGCCGGGCCGGAGGAACGCAAAATCACCTCCAAGCCTGCAGGGGGTGCTGTGGATGGGAGAGCTTATGACATGACCCCAGCATGCAGCCTCCCCCAGAAGATCAGGAGTCTGTGTCTCAGTACGGAGGAGGCCTTTGTGTCTGGGAAGTGTCTTCCCTTCATCAACCCCTCATCCCTGGAGACCCTCAGGGCCCTGGTCCAGGAGATACAGAGTAGTGGGGAGACTGACCCGGAGATGTGGAAGGACTGTGAGGGCCGATGGCTGCATCTGTTTCAGCTAGTAGAGAAACAATACCAAGAGCAGATCTTGGCTCAGCAAGAACAGTACCAGTGCCAAATACAGCTGATTCAGGATGAGATCAAAGCCTTAGTTCAGCTCCAGAACCGCCAGACCAGCACACAGACGCACCACGATTACCCATATATCCCTACTGCTACCACCAAGACACAGACACATCACGATTACCCATCTACTCTGTCTActgtcacacagacacacccagacTACACCTCTTCCCCTGTTGTTACTACCAAGGACTACCCTTCACCCCCCACTTCCAACCCCAACCACCCTTCAACTTGCACGGACCTTCCCAATGGGAACTCgcccctctctgctcccctcacctccctcttTGTCCCCCAACCCATTTTGAGCTCCACCTCCCCTCAACCCCCACCCCCCCGGCCAGAGCCGGTCACCCTAGGAGAGAGGTGTGCTGATGGGGCAGGGACGGTGCTATGCAGTGGGTACAGGACCCTGTCGACCTGGGGCACAGGGCTGGAGGGGACAGTGACTTTGGGGGGAGCAGAGGAGACAGGCCAGGTCGAAGAGGAGCCTAGCTGGTCCCTTCACCTCCAGGACAACACAGACATCACTCTGATTGGCCAGGAGGGTCAACAGAGGAGCGCCTCGGCCAATGAGGTGGCTCCTAGAGCCAATCCTAGTCCACCACCTGAGCAGCAGAGAACCTCCAGCCAACCGCTGACATCCTGGGCTCAAAGACAGAGACGCAGCAAACCCAAGAAGAGCAGGTTAGGGCAGGCCCAACATCCCCAGGCCTCCCCCTCACCCCTTCAGGCCCCGTACCTGGGCCAGAGCGACCCTCAGTCCTCTTCCCCGCAGGAGCAGCAGCCCAGCTCCAGGAAGAGCCCCAGAGACAGCCCCCTGGACGACACTGACCTCCAGGACCAGCATGGATGGGCTGCTCCCTCCACCAACTCCTTCCCTCTGAGGAGGAGTGACAGCCTCATGTCTGAGGTCTCAGGTCTGACATACTGGCGTCTGGATGAGAgtgaactctactgccctctacCTGACAGCTTTGACAGTGGCGCCGACCTCCTGCTGCAGGAGGCCTCTATCAGTCTGACCTCTCCAGAGGAACAGAAGCTGTCTCTCAGAGAGATCTACCACAACAAGCAGAGAACTGAGTCCAAACGCACCGACTGGGACCTCTCTCGCACATGCAGCCCCACATCAccacaggTGTTAACTCTAGATCCCACTGTTCACCTCCGTCAGTCAGACCGGACCTCCGGCTTCACCTCGCCCTCCCACTTCAGCAGCCCATCGTACCCCACCCTGCCGCACCTCTACTCCCGCGTTGGCACCCCCTGTACCCCAGTTAGCCCAGCCTGCATGGCCGAGGGCAGTGCCAACCCCGGGGACACAGACTGCCCCTCCAATGCCTCTAGCCTCTCTGTCACCGCACCTACCCCAGCCATGGTAGCCTCTGCTCAGATAAAACTGGCCCCATCATCCCCCTCTACTTCCAAGCCCCTGGTGCTCCCCAGCAGCCAGCAGCACAAAGCCTTGGCCACTCAGGACAGCAAGGACGAGgggagccacacacacaccagcaaccTGATGAAACTGGCTGTGTCTGGGAAGCACACGCACTCCCACACACTCTCCCGGGGCAACCCTCGTATGGAGAAAGCGGCATCGCTGGAAGACCCTGTGGTCGTCTCTCTGCTGAGAGAGAATCTGAGGGAGAAACACTGTCGTCATGTAGCTGACCTGAAGGCTTACTATGAGGCAGAGATCAAACTCCTCAGAGACAAACTGGACCTGAGAGACCTGCCACACGACCTAGAGCAGAGCAACCGCACGCtcagacagagGTGTGCTCAGCTAGAGAGGGCTCTGTCTGAAGCCAGCAGCTGTATCCAGGAGCTGGAGAACAAGAACTCAATCCTGGAAAAGCAACTGGCTGACTGGCCGATGCGCTACGACACAGCCTGCTCCACGGCAACGTCCCTGCAGCAGCGATTGGATGGAAGCAGGCGGTCAGTCAGGGAGAAGGACGCCTCGGCTGGCCGCCTCAGGACCCGGGTCCGGCAGCTAGAGGAGGCCTTGGAGAACGCCTGCAGAGAAACGGAAGAGAAGGAGgccaggagggagagggagtacaAGATGCTGCAGGACCTTCTGGGGGAGTATGACTCTCTGAGGAAAGAGCACGAGGGGGTGAAGGACAACCTGGTGTCTTCAGAGAACCAGCTGTTTGATGCCAACGAGCAGGTCTCTAGACTAAAAAGGGTGATCTGTAAGATGGAGAGCCAGGTGAATCAACTGGATTATGTGAACCAGGCCAGGAGTCGCCAGGCCGtccacaaccacacacagtccTCTGGAGCTGGTCTGTACCACCATCCGGACCTGCTGCTGTCCCCCAGCAAACACCCTCGGCAACCAGAATCCACATATAGGATATCTCCTTGCCCTCAAACTGACCAATCACATAGCATCAGGAAGTCTCCTCTTCCTCAAACTGACCAGTCACAGAGTTACAGGAAGTCTCCCTGTCCTCAAACTGACCAATCAGGCAACTCGGGCCACACTGGCAGCAGAAGGTGTTCGTCCCCTCCAGAGAGTGAGCAGCCCCAGAACCAGGGTGGGGGTGTGAGGGAAGCTAGGGGGCCTCTGACCCCACTGATGAGGGCCCTGATAGAGCTTGAGGAGACCAGGACCACTGAGGGCCGGGCCCCCTGGTTGGGCAGTCGGAGGCCTACTGTTGGCCTTTTAGAGAGAAACCACAGAGAACCACAAACACAGGACCGTGACAGGGCTATGGAGGATGTGGCTGGCCTAGAGACGGGAATGTCCGGGACAGTCAGGGGTGTGCCTCTGCTGAGAGCCCAGAGAAGTCTGTCTCCAGAAGGCCACAGGTCCTCTTCTCTGCCCCCCCGCACCCAGAGGACCACCTTTCCCCCTACTACACCCAGTAAGAGGGAGACCCTAATGATGCCTCTGTCAGCTAAGTCCAGCCCCAAACGCTGCCCTGCAGAGAACTACTCCACTGCCTTTGGCAACCCACCACCACGACAACAGCTACACAACAGGTTTGACGTGGCGTTAGACCAGAGACGCCACTCCTTCCACAACTCCAGCCCCAGGAAGAGACTGTTCCCAGAAGCCTCCCAGCGGTCATCTGGTGGCTCAGTGGAGTCCTCAGGCAGTGTTGACCCCCAGGAGGGTGTCTTTGGGCTGGGCTGGCAGGAGCAACGGACTGTGGGGTCATGCTCAGACCTCCAAGACCCAGGGACAGACCTCCAGACCAGGCTCCACTCCCTGGCCGACGCTGAGAGGATGTTAGACGAGCTCACTATGgagaaacaacagATTGAGTCAGCGTTGAGCCGGATGCCTGGATCTGGTGGGAGGGTGAGCCTGCAGACCAGGTTAGATGAGGTGGCCTTAGAGAACCGTCTAGAGAGAGTAAACCGTGACCTGGGTTCCATCCGCATGACCCTGAAGAGGTTCCACGTTCTACGCTCCTCTGCCAAAATATAGCAATGTTTTTATTAGATGACGTCATAGGGCCTAGAGTTTTTCTGGTCAGTTTGCATGGTCAGGAAATACTCCTGGTCCTAGCTATAGATGACTAGATATCAACTCTCCTAGTTATGGAACTAGTTATAGTTTTCTGTGCTGTAGATTGATACAGAGCCCATATTGTTCTCTCTTGTCTCTGTATCATGACCCACAGTCTTTTCTACACATATAACTCGGGGATATTTTTCTATATGTTTGGAAGAGCTCACTATTTGGAGTATATTTTTTTGAAATGCTCAGATTTGTAAAGtcgtttactttttttttttagatgtttAAAAAATAGAAATATGATATGCTTTGCTTGCCATATTCAGGTCAATGATGTCGATTTTTCAATAAGAATGGAAGAACCTCCTAATATCCAGCAGAGACATGTACCCATCTGGAATGTGCCACTGCCACCTCTGTCTAcatttttattaattgttttaaaatgttttattcatcGCATACAATTGTATTTATTACATTGCATTTTTATGTGTTCATTACAAtggtgcatttaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatataaaaataatctttatagCCTACAATGTTCAATTCTACAAGTTTTGTATTACCAAACTAGTATTATATTCTTCAGTTTCACCATTACTTGATCTTTTACAAAAACCTTGTACTGTAGCACATTTTTTAATTGCTTTCCTTTTtccatttttatatattttttatctccTTTGAACattccatttgttttgtgttaATTCCATGTTGTGAAGGAAGGGATTTCACCAGTACCTAAccaccctctcttctctctatactcTGGATCTCATGCAAAAACCAAACCAGCACACATTTGAAATAAAAAACACACAAGTACACTGCTCCACAAATTATTGTAATGCATGTTAGTTGCACTGTTTGTTTCTTTGGTCAAGTTGTGTTCTATTAAAACATTTTGCAGTTTGCAATGACTTGAAATGAACCTCACTGGAACAAAAAAATGTACTGTTTGCTCACAATAAATAATGCTTACATTATTACAA

Function

GO: NA

KEGG:

id description
K16775 MPHOSPH9, MPP9; M-phase phosphoprotein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1189142 lncRNA downstream 34605 17003191 ~ 17007766 (-) True LOC110537074
TU1189192 lncRNA downstream 39681 17001047 ~ 17002690 (-) True G1043515
TU1189159 lncRNA downstream 117228 16923503 ~ 16925143 (-) True G1043488
TU1189153 lncRNA downstream 126700 16915326 ~ 16915671 (-) True G1043482
TU1188835 lncRNA downstream 158964 16882734 ~ 16883407 (-) True G1043218
TU1189231 lncRNA upstream 13198 17077789 ~ 17135064 (-) True G1043545
TU1189271 lncRNA upstream 74580 17139171 ~ 17139473 (-) True G1043577
TU1189281 lncRNA upstream 91361 17155952 ~ 17156375 (-) True G1043584
TU1189286 lncRNA upstream 102224 17166815 ~ 17167321 (-) True G1043589
TU1189260 lncRNA upstream 171876 17236467 ~ 17239891 (-) True G1043567
XM_036937060.1 mRNA downstream 466 16940427 ~ 17041905 (-) False LOC110537074
XM_036937059.1 mRNA downstream 17369 16940427 ~ 17025002 (-) False LOC110537074
XM_036937058.1 mRNA downstream 17370 16940427 ~ 17025001 (-) False LOC110537074
XM_036937061.1 mRNA downstream 17377 16940427 ~ 17024994 (-) False LOC110537074
NM_001165148.2 mRNA downstream 403420 16637490 ~ 16638951 (-) False LOC100305243
XM_021622834.2 mRNA upstream 650 17065241 ~ 17067146 (-) False LOC110537077
XM_021622835.2 mRNA upstream 650 17065241 ~ 17068020 (-) False LOC110537077
XM_021622828.2 mRNA upstream 3590 17068181 ~ 17098190 (-) False LOC110537076
XM_021622829.2 mRNA upstream 3590 17068181 ~ 17098190 (-) False LOC110537076
XM_021622830.2 mRNA upstream 3590 17068181 ~ 17098190 (-) False LOC110537076
TU1188573 other downstream 497645 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 714257 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 714257 16324963 ~ 16328114 (-) True LOC110537059
TU1187996 other downstream 937488 16104163 ~ 16104883 (-) True G1042500
TU1185711 other downstream 2731319 14307600 ~ 14311052 (-) True G1040432
TU1189216 other upstream 730 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other upstream 730 17065321 ~ 17067128 (-) True LOC110537077
TU1190341 other upstream 631538 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 953513 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 991520 18056111 ~ 18058392 (-) True G1044671

Expression Profile