RNA id: XM_021622830.2


Basic Information

Item Value
RNA id XM_021622830.2
length 6779
RNA type mRNA
GC content 0.50
exon number 33
gene id LOC110537076
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17068181 ~ 17098190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACGTGACACGGTTTTAGCGCTCGGTTTCTGGACTGTGAGGTTTAAAGAATTATGCTTGAAATGCCAACATTATTTTCTTTATCGATTGAGGATCGCCAACGGACGCCCCGCGGCCATTTGGAAATACTTTTTTGTCGACGGAGCAGAAAGAATTCTCGACTGAAAATTCCAGCGCTCGGGTTAAACGTCACGTGACCAACCCGCGACTGGCTGCTTGGTAAAGATGGCGGAAGGTGGTTAGAAAACAGAGGAGCGAAGAGGATGATGGATCCTGGACAGGATTTGCTCCTAGCAGCCCTGAGCGAGAGCGGCATCTGCCCTAACGACCTGTTTGACTTTGACCCTCAGGATGCTGCAATGCTGTCTCCCACCCCACAGTCCATCTCCATCAGTGCCCTGGGTGTTGACTCAGGGATGGAGCCAACGGGAGTCACAGCTCCACCCAATTCTACAGGCACAATCAGGCACAAACCTCAACCCTCAACCACCACATTTGTCTTAAATCAACTGAATCAGTTGCCATCGCTGGGAACAATCGTTGTGACCAAGCCCTCAACTGGAGGCACTGCCAGACATACCATCACAGTCACCAAGGTAGTCCATACCACTCCCTCAGCCCTGCGGGGGTCCACTTCCACACTCACCTCCTCCACGGCTCTCCCCTCCGCAGTCTCCACAGTGGTTTCTTCCAGTCTAGAGCAGATCCAGCTGAAGGACCTGTTGAGGACAGGCGGTCTGAAGGGCAGCACCATGAAGGGTAGTAGTCTGGTGGAACTCATGAGGCTCAAGCCACCTCACGACATCGCCCAGCCGGTCGCCACAGCAATAGCCACAGGCACCAAGATAATACTGGTCTCGACAAAGATGATGCATAAAACAGCGGAACTGAACAACGGGATAAAGGAGGTGTCAGGTAAAGACTCCGCTCGGGTCTGGGTGAACGACGACGTGAAAGTGCGGAGCTTCTCACCTACACTAAAACTcccaggaatggaggaggaggctgaggaagaggaggatgaagagttGGGTCATGCTGAGACATACGCTGAGTACATGCCCATGAAATTGCGGATCGGGCTGCGTCACCCAGACCCAGTTGTGGAGACAAGCTCCCTGTCCAGTGTGAATCCTCCCAACGTGTGGTACAGAATGTCCATACCGGAGGAGACCATCGACCGCGGCTGGCTGTCTGCTCTGCAGCTGGAGGCCATCACATACGCTTCCCAGCAACATGAAACATTCCTCCCTAACGGCGACCGAGCGTCCTATCTGATAGGAGACGGGGCCGGAGTGGGGAAGGGCCGAACCATCGCTGGGATAATCTACGAGAACTACCTCCTGGGCAGAAAGAGATCACTCTGgttcagtgtttctaaTGACCTGAAGTATGATGCAGAGAGGGATCTGAAAGACATAGGAGCCAAGAACATTCCAGTCTATTCCCTCAACAAGTTTAAGTATGGTAAGATCTCGTCCAAACACAACGGCAGTGTGAAGAAGGGGGTGATCTTCGCTACGTATTCCTCTCTGATAGGAGAGAGCCAGTCTGGAGGGAAGTACAAGACCCGCTTCAAACAGCTGCTCCACTGGTGTGGACAGGCCTTCGACGGAGTCATTGTGTATGACGAGTGTCACAAAGCAAAAAATGTCTGTCCCATCGGCTCGTCCAAACCCACCAAGACTGGACTGGCCGTCCTGGAGCTGCAAAACAAACTGCCCAAGGCGCGGGTGGTGTACGCTAGCGCCACTGGTGCGTCTGAGCCCCGTAACATGGCCTACATGAGCCGGCTGGGCATATGGGGGGAGGGGACCCCCTTCAGAGAGTTTAGCAACTTCATTCAGGCTGTGGAGCGCCGAGGTGTGGGTGCTATGGAGATAGTTGCCATGGATATGAAGCTGAGGGGGATGTACATCGCCAGGCAGCTGAGCTTCACGGGTGTCACGTTCAAGATTGAGCAGGTTCCTTTGACAACCCACTACATCAAGATGTACAACAAGTCTGTACACCTGTGGGTGGCTGCGCGGGAGAAGTTCCAGGCGGCTGCTAACCTGATGGATGCAGAGCAGCGGATGAAGAAGTCCATGTGGGGTCAGTTCTGGTCGGCCCACCAGAGGTTCTTCAAGTACCTCTGCATTGCGTCCAAGGTCCGCAGGGTGGTGCAGCTCGCCAGGGAGGAGGTCAAAAACGGAAAGTGTGTTGTGATTGGTCTCCAGTCGACAGGAGAGGCCAGAACACTGGAGGccctggaggaaggaggaggagagctcAACGACTTTGTCTCCACCGCCAAAGGTGTGCTCCAGTCTCTGGTAGAGAAGCACTTCCCAGCTCCAGACAGAGAAAAGCTGTTCAGCCTGCTGGGCATTGACCTGCCGGTCATGAAGATCCCCTTCCCCAGCGAGGCTGCAGCAGAGCAGAAGGGAAAGAAGAGGAAAGGTGCCAACATAAAGAAGGCAGAGAAGAGGAATAGAAAATCAGGTGGTCTGTCGGGGAACAGCTCTGATGACAGCAAATCAGAAGAGTCTCATAAGGACGATGCGGAGAGTGACGACAGCTTCAAGTCGGTCAGCTCAGGAGAAGATGACGAAGACGACTTCAATCCCTTCAAGGATGATTCCAgcgaggatgaggaggatgACCCCTGGCTGTCTGGAAAGAGGAAAGGGGTGAAGAAatgcaagaagaagaagaagaagaagaagagcattGACCCAGACTCTATCCACAGTGCCTTGTTAGCTTCTGGTCTGGGCGCCATCAGGCCTGCTTTCACCACCCCCGCAGTCAAGATCTCCAGCACACCTGCCATAGCCAAGGTAGAGGTAGATGACAGCTGTATGACCAGTCAGGATGCTGTGGAAGATGCTCAGCAGATGAAGAGAGATCTGTTGGACCAGCTAGATAAGCTGGCTCAGGATCTACCTCCCAACACTCTGGATGAACTCATAGATGAGCTGGGAGGACCTGACAACGTGGCTGAGATGACTGGGCGTAAAGGCCGGGTGGTCAGTAACGACGATGGCAGCATCTCCTACGAGTCTCGGTCTGAGCTGGATGTTCCTGTGGAGATCCTCAACctcacagagaaacagaggttcATGGACGGAGAGAAGaACATAGCCATCATCTCGGAAGCGGCCAGCTCGGGCATCTCCCTGCAGGCTGACCGGCGTGTAAAGAACCAGAGGAGGAGGGTCCACATGACCCTGGAGCTGCCCTGGAGTGCAGACAGAGCCATACAGCAGTTTGggaggACCCATAGGTCTAACCAGGTGACTGCTCCTGAGTATGTGTTCCTCATCTCTGAGCTGGCTGGGGAACAGAGGTTTGCCTCCATTGTGGCCAAGAGACTGGAGAGCCTGGGTGCCCTCACCCATGGAGACAGAAGAGCAACAGAGACCAGAGATCTCAGCAGGTTCAACTTCGACAACAAATATGGCAGAAATGCTCTGGAGATTGTGATGAAGTCCATTGTTAACCTGGACTTTCCGTTAGTGAATCCTCCATCGAACTTCGAAGGGGATTTCTACAAAGAGATCCTTCATGGGTTGATTGGAGTGGGTCTGATCCATGTGGACGACAGATCAGGGATCCTGTCTCTGGACAAAGaCTACAACAACATAGGGAAGTTCCTGAACCGTATCCTGGGGATGGCGGTGCAGGAGCAGAACGCTCTGTTCCAGTACTTTTCTGACACGCTGGCAGCCGTCATACAGAATGCCAAGAAGAATGGACGCTACGACATGGGCATTCTGGACCTAGGTTCTGGGGATGAGAAGGTGAAGAAGATGGAAGCCAAAAAGTTCCTGACTCCAGGCTACTCCACCTCCGGACATGTGGAGCTCTACACGGTGAGTGTGGAGAGAGGCATGTCTTGGGAGGATGCTACCCATGCCTGGGCTGAGCAGAGTGGACCTGACGATGGCTTCTATGTACAGATAAGGAACAACAAGAAGACTGCTATCTTGGTGAAGGAGGTGAACAGTAAGAAGAGGCTGTTCCTGGTCTACAGACCCAACACAGGCAAACAGCTGAAACTGGAGGCCTACGCTGACATCAAGAAGAAGTGTAAAAAGGTGCTGTCAGATGATGCCAAGCAGCACTGGATGGACCAGTACCAGTCTTCAGCTGAGATCTGCTCTCATGCTTACTGgcgTGGTAACTGTAAGAAGGTGTCGGTGGGTCTGCATTGTGAGGTGGGTCTGCGCTGCAGGACGTACTATGTGCTCTGTGGATCTGTGCTCAGTGTGTGGACCAAGGTGGAGGGAGTGCTGGCCTCCGTCAGCGGAACCAACATCAAGATGCAGATCGTCCGTCTCAGGACGGAGGACGGGCAGAGGATTGTGGGCCTGATCATTCCAAGTAACTGCGTCTCTTCTCTGACCAACATCCTGTCGTCGTCTGACCAGTCTCAGCAACTGGCCGTTCAGCAGCAGCAGAAGTGGCAGCAGCTGCACCCTCAGAGCCTCAGCCACATGCATAACATGGGTTCACCACACAGTCTGGCCTGATGGGCTTCGACACCCATTTTCTCCTCCACACCCTGGGTTCTCGACCCAACCTGATGGGATACGACAACATTTCCATCAATCTCTACCGTGACACTATCCaccacctcttctcctccctctccgttCCTCCTAAGGTGCTGAGTTGTGTTTTTCCCTGAAGCTAAACCACGGTGGCAAAGTTAAGATTTCAGGGTTTATGTCCAAAGAGGAGACAGTCTGCCTTTTGACATCCAGAGGAGTTGGCTTGACGAATAATATTTCTCTGAGATTCAGAGCTGAAGATTTAGAAGAGGCTGCGGTGATGAAAGGGGGAAGAGTAGAGGACGCATGGAGAAGTGGCATTATTAAAAATGCCAGAGACTGTTTTTCCTGTtgcacccctctccctccccccagctCTATGTAAACGATGGTGTGTGCCTTCTCTACTGAAGGATGGGGGATGTCACCCAGGTTTTTGTTTTCTACAGGTGACTGGACAGTGCTCAGACGGTGCTCAGGTGTTCGTTAAGCTacacagtgattttttttttttttttttttaaaacaggtgTTTTACAAAATGTCTACCTGAGATGCATGACCACACACCAACTGCTTGCTTTCTTCATTTTAGATTTTAATCGATCAAGTCTCAGGCATGATGACAACTCTCACCATAACTAcatttaaatggcaccctattccataggtagtgcactgcttttgttcACCATCGAGAGTAGGGTGCAATTTCTGAAACAATCCTTGTTTCTATCAAACATGGGTGTATCCTTTCTACCTACAGAATTGTTTACAGCTTGACTATCAAGAATTGTAATTGTGCATGGTTTAAAATAACTTAATTTTCCTGCATTTATTCCTCTGCTTTCAAAAGATGTTTGGAACGGGTTGTTTGATATGTGGCATCAGATTCGATATCTTGTACTATCAAACTACAGCAGATACACTCCTGGAGTGTTATTATACAATTGCACGTGAACCGACAGATCTTGTTTGTACAAGCTGTCTAAAAACGCTACATTAAAAGCTGGTATTCAAGATAGTTTGTTGCTGAATTCAAAACGGATACCTTTTACCTCATGTAGGTGTGTGTAAATCTGAAAGGATTGGATCTGTGGTAAAGATTGCACCTTGGAGGCAAAGGTGGTATCAATTAGCATATTCACTGGTATCTATCTGATCCTTTAGGTCACATGTCAAACTCTTTGcacagagggccgagtgtctgcgtgTTTTctctcccttgtacttgattgattaattaaggtcactaattagtaagttCACTCccttacctggttgtctgtcttaATTAAAGGAAAAACCAGCAGACATTACTGccctaggccctccatggaatgagtttgacactacTGCCCtgggccctccatggaatgagtttgacactacTGCCCtgggccctccatggaatgagtttgacactacTGCCCtgggccctccatggaatgagtttgacactacTGCCCtgggccctccatggaatgagtttgacactacTGCCCtgggccctccatggaatgagtttgacactactgccctaggccctccatggaatgagtttgacaatACAGCCCTAGGTActtcatggaatgagtttgacactacTGTCCTAGGCACTTCATGGATATCTAAAACAGGTgtttcaaactcattccatggaggtccttgtagtgtctgctggtttttccTTTTAATTAAGACTTAGACAACCAGGAGAGGGGAGtttcttactaattagtgaccttaattcatcaagtacaagggaggagcaaaaacacagacactcgaccctccgtggaatgagtttgtcaCGTGACTCAGGATTCTTGGGATTGGGCACTTGTTCCTTCACTGATTCTGAACTGGAATCTAACCTCGAATCTCTACCAGTCAGCAACATTGCTGCTTGATCTCTGGTACTTTTTATCTGTTTTGTCACTTGAGACAGGATGTACAGGGGCGGAAGActttctaaaaatatattttttaaatgaagtaATGTAAAAAGCGTGAGTTTAGGATGCTACTTTGCTATACCAATGTGTATAGTGACGTTTGGACATaagaaaaaacgtttttttttgctTAAATAGCCGTTAACACTTGAAGGATGGTGTAATTTCATCTTTGCACGAGTTGCACTACTGACATGTTCTACAACAAATCTGTATTAAATGATTTAACTGAGTGCAAGATTTCTACCTCTTAATGACCAATAAATACCAAGGATAAAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1189234 lncRNA downstream 13825 17053580 ~ 17054356 (-) True G1043548
TU1189142 lncRNA downstream 60415 17003191 ~ 17007766 (-) True LOC110537074
TU1189192 lncRNA downstream 65491 17001047 ~ 17002690 (-) True G1043515
TU1189159 lncRNA downstream 143038 16923503 ~ 16925143 (-) True G1043488
TU1189153 lncRNA downstream 152510 16915326 ~ 16915671 (-) True G1043482
TU1189271 lncRNA upstream 40981 17139171 ~ 17139473 (-) True G1043577
TU1189281 lncRNA upstream 57762 17155952 ~ 17156375 (-) True G1043584
TU1189286 lncRNA upstream 68625 17166815 ~ 17167321 (-) True G1043589
TU1189260 lncRNA upstream 138277 17236467 ~ 17239891 (-) True G1043567
TU1189330 lncRNA upstream 145307 17243497 ~ 17243760 (-) True G1043633
XM_021622835.2 mRNA downstream 161 17065241 ~ 17068020 (-) False LOC110537077
XM_021622834.2 mRNA downstream 1035 17065241 ~ 17067146 (-) False LOC110537077
XM_036937062.1 mRNA downstream 3590 17042371 ~ 17064591 (-) True LOC110537073
XM_036937060.1 mRNA downstream 26276 16940427 ~ 17041905 (-) False LOC110537074
XM_036937059.1 mRNA downstream 43179 16940427 ~ 17025002 (-) False LOC110537074
XM_021622842.2 mRNA upstream 13573 17111763 ~ 17128843 (-) False LOC110537079
XM_021622838.2 mRNA upstream 13573 17111763 ~ 17129178 (-) False LOC110537079
XM_021622840.2 mRNA upstream 13573 17111763 ~ 17129178 (-) False LOC110537079
XM_021622841.2 mRNA upstream 13573 17111763 ~ 17129178 (-) False LOC110537079
XM_021622839.2 mRNA upstream 15265 17113455 ~ 17129179 (-) True LOC110537079
TU1189216 other downstream 296 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 1053 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 523455 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 740067 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 740067 16324963 ~ 16328114 (-) True LOC110537059
TU1190341 other upstream 597939 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 919914 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 957921 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 999373 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 999462 18097652 ~ 18099722 (-) True G1044692

Expression Profile