RNA id: XM_021622838.2


Basic Information

Item Value
RNA id XM_021622838.2
length 3443
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110537079
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17111763 ~ 17129179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACTGCAATCTGACCACAGAATCGGAAAAGAACGACAGCAAAGACAAGACCACAATGGGACAGCGCCGGGTGATttcatcaaatttatcagaaatccCTTACAAGACGTCCGACAGGAGTAGAAAAACGCAATCGATACTCATTTAAGGACTAATTGAAGTGGAACAGATACACACAGAACGAGCCGAACGACGAAAAGTCAATAGTTTTTCCTAAGGGAGGAAGTTTATTGTGGCGAAGGAAATATAATAGACCGGGTAAGCAGGGTGGGTCTACGGAAAGCAGCCAGAGCGGGGTACAGTCAGAATACAAACTCACCCACCCAGCCAGACATGGAGGAGTTCGGGTCAGCGTTGGAAAAGAATGTGACCGATTTAACGGTTATGGACGTGTATGACATAGCCGCGGTAGTGGGCCAAGAGTTTGAGAGGATCATTGATCAGTACGGCTGCGAGGCTCTGTCCAGGCTCATGCCCAAAGTAGTGCGGGTGCTGGAAATCGTGGAGGTGATGGTCAGTAGGAACAGCATCAGCCCGGAGACAGATGAGCTGAGGCTGGAGCTGGATAAACTACGCCTGGAGAGGATGGACCGgctggagaaagagaagaaacacaAGAAGgagttgGAGCTGGTAGAAGATGTATGGCGAGGGGAGGCCCAGGACCTGTTGTCTCAGATCGCTCAACTTCAGGAAGAGAACAAGACTCTTCTCACTAACATGTCCATCAAAGATCCCATGAGTGAAGAGGACATACAGAGGCACGAAGGTATGTCGGAGCGGGAGCGTCAGGTGATGAAGAAGCTGAAGGAGGTAGTGGACAAGCAGAGAGACGAGATCCGAGCCAAAGACCGCGAGCTCACGCTCAAGAATGAGGACGTTGAGGCACTCCAGCAGCAGCAGTCTCGTCTGATGAAGATCAACCATGACCTGCGCCATAAGATCTCTGTGGTGGAAGCTCAAGGGAAAGCCCTCATCGAGCAGAAGGTGGAACTGGAGGCGGGAGCTCAGGCACGGGTACAGGAAATGGGAGCACTCCGGCAGGAAGTTACACGTTTAAGGGAGCGACTGCAAGGAGACATGCCCCCTCAGGGTCCAGAGGTGCCTCCTCCCCAGCTCCCATCCCCTGCACAGccTGGTATTCCCTCCTCAGAGGCGGGGATTCAGGGTGTGGGCTGGCCCGAACCAGACAGACACTACCCCCCAGAGCTGCGGTTGGGGCATTACGATCCCGCCCCGCGTCTCCCGTCCCTGGATGCTGATGAGGATGTAGAGGAAGAGGCAGTGTTGCTATGGGAGGCGATGTGTGATCAGGACACACCTGCTCTGTTTCAACATTTTACCAAGGAGGCACTATGTGATGAGGAGGTGGACGGCCTGGACCAGAAGGATCCCAACAGGCCCCGGTTCACACTACAGGAGCTGAGAGACGTTCTGCATGAGAGGAACGAGCTCAAGTCCAAAGTGTTCGTGCTGCAGGAGGAGGTCGCCTACTACAAAAGTGAAGAGGTGGAGGATGAgaccgggcctcccactccttcccCATCCCCCGAACAGCTGAGGGCACGGCCCCGACACAACGCGCAGCCTGAGTCAGGAATCAAACGCCTgTTTAGCTTCTTCTCTCGTGACAAGAGGCGGAACTCCCAGCGGAATGCACAGTTTGATGACAGCTTCAGCTCGTGGGCGGGGAATGATGAGGTGTACACAGAACAGGCCCAGGAGGCTTTGCAGCACATGTAGTGATTGGACAGCGTTTGATGATGTCACTCAGAACTCTTTCCCTGTAACGTTGCAATGCACTTAAAGGCATCGTAAAGGTTAGCTTATTGCACAGTACACACACCTACAgctcagcacagccatccaccTACTGAAATACATACTGACACTGAAATACCATCAGCTCTAAGTAACAGAGTCATTCACCCAGCATCTAGAGTAGTGAAACCTAACCACCCTGGCTTTGGCAGTAAAATCCTTGCCTTGCCTTGGGACTGTGCTTAGTGTGCCTGCTGCAGCACAATGGGATTGTATGACATTTTTGCTTCTAAGTGACAGGAATCACAGAGGTTTGAGGGTGAAGAGGAGCCTTTCTTTATCCCAAAGTGAAACCCACCAGAATTGATGGATGCTCAGAGCGGTTCCCTTTGTGATAGAACAGGCAGGGATACACTAGGCGTGTGAGAGACAGGCTTGGAAGGATTGTGGAACGAGGTGACAGGAGATCGAGATAGAGGAACCACACGAGACACTCCAGATAGAGAATCATGGGAcacagaagaagaaagaggagagttCAATCCAGTAAAGAAACCTTGAAGACAAGTGggcatgtttttttaaatgattcaAATAATGGTGGCAGTGCTGACCCAGATGTAGTAGGCTCTGAACCATCTTTATACTCCCTTGGCCCTGAGCTAGACCCGTCATGTCCTTAGAGGCAGCTCGAGGGCACTATGGCTAGGCCCACCTCACCAGCTAAAAAGTGTGTGAACAGATGTGGTGGTTTTTTACAGATCGACCTTGCACATAAATTAATACGTTACTGGGTGTTGAGATGGGATTGCCTAATTTAAAGAAAATGTTATGGGTTTATATTTTTCCAGTGGTGAATGAAGCACAGAAGGTTGTAGTTTTACAATGTCTTATGGAAAGACAGTATTTTTGTTTTGGAATTATTTAACTAGATACTGCTTTTTTGTTTTCAGGACTAGCCAAGTGGTGTACATATGAAGCAAGAGAGACAAAAATATGCAAGTTTGGCTAACTGTATATTTGATATATACATGTACATTTTGAATGGGTGCCATGTTGGAACCAAATGTGACAACACAAACTAAAAACACCATTGAGAATGCAAATTTGAATGTCATTGTGGAATATTTGGTTTAAACATGGATGACAGTTTGCCAAACTCTGTGCTGTGGCTGCAAGATGGTTTGTGAGAAGTAAAATGGTTAGTGTGGATGAGGGAGGTTCTTGATAATGAGTAGTCCTGACTTCAGCAGTCAGGCAGACATAACGCCTCAGCCTCACTATGCTAAGAGATCATTAATACTATTACTATGACTGGACAACTTTTCAATCATTTATTTTATGATGCAAGACACTTAATCAAGGCGCAAAACTAGGGCAACACTTATTTGTGACAAAAGGGATTGATAGTCGAGAAAGGTTATATCTTGTCTGGTGGCAACATCTACACCAAAATGTACACAAAGGGGAAATAAATACAGAATCTATCCAAACAAGGGAAGATGAGGGAAGATGTCAATATATGCAAGACATCCTCCTTTTGCAACAAACTTTATGGACCCGCTTCACACCAAGTagatttctattggaaggattttaAATATGATAAATGTCTCAGTTTTCATACAGCTTGTTGCCTTTTTTTCAGATATGCAAACTCAATAAATATGGTGATCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1189239 lncRNA downstream 25991 17059200 ~ 17085772 (-) True G1043550
TU1189234 lncRNA downstream 57407 17053580 ~ 17054356 (-) True G1043548
TU1189142 lncRNA downstream 103997 17003191 ~ 17007766 (-) True LOC110537074
TU1189192 lncRNA downstream 109073 17001047 ~ 17002690 (-) True G1043515
TU1189159 lncRNA downstream 186620 16923503 ~ 16925143 (-) True G1043488
TU1189271 lncRNA upstream 9993 17139171 ~ 17139473 (-) True G1043577
TU1189281 lncRNA upstream 26774 17155952 ~ 17156375 (-) True G1043584
TU1189286 lncRNA upstream 37637 17166815 ~ 17167321 (-) True G1043589
TU1189260 lncRNA upstream 107289 17236467 ~ 17239891 (-) True G1043567
TU1189330 lncRNA upstream 114319 17243497 ~ 17243760 (-) True G1043633
XM_021622828.2 mRNA downstream 13573 17068181 ~ 17098190 (-) False LOC110537076
XM_021622829.2 mRNA downstream 13573 17068181 ~ 17098190 (-) False LOC110537076
XM_021622830.2 mRNA downstream 13573 17068181 ~ 17098190 (-) False LOC110537076
XM_021622831.2 mRNA downstream 13573 17068181 ~ 17098190 (-) True LOC110537076
XM_021622835.2 mRNA downstream 43743 17065241 ~ 17068020 (-) False LOC110537077
XM_036939648.1 mRNA upstream 6768 17135946 ~ 17137974 (-) False LOC118937877
XR_005035291.1 mRNA upstream 6768 17135946 ~ 17137974 (-) True LOC118937877
LOC110537083 mRNA upstream 50309 17179487 ~ 17180486 (-) True LOC110537083
XM_021622851.2 mRNA upstream 120894 17250072 ~ 17256274 (-) True LOC110537086
XM_021622852.2 mRNA upstream 140499 17269677 ~ 17275098 (-) True ddx55
TU1189216 other downstream 43878 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 44635 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 567037 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 783649 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 783649 16324963 ~ 16328114 (-) True LOC110537059
TU1190341 other upstream 566951 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 888926 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 926933 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 968385 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 968474 18097652 ~ 18099722 (-) True G1044692

Expression Profile