RNA id: XM_021622852.2


Basic Information

Item Value
RNA id XM_021622852.2
length 2248
RNA type mRNA
GC content 0.51
exon number 13
gene id ddx55
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17269677 ~ 17275098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAGGCGGACGGTAAACATCGATGTACAGGAAGTCGGTACAGCGTGGATTGTGGCTGCATTTCCAACATGGACAACACAACTGAAGGAAAATGGGATAGTTTACCCGTTAAACTTAACGACGGTATTACGCAAACTCTCAATGAGCTTGGATTTACACATATGACACCAGTTCAGTCTGCCTGTATTCCACTGTTTATGCGAAATAAAGATGTGGCTGCCGAGGCTGTGACTGGCAGTGGAAAGACATTGGCCTTCGTGATTCCCATCATAGAGATACTTATAAAGCGAGAGGACAAATTGAAGAAAATGCAGGTTGGTGCTCTGATCGTCACGCCGACCAGAGAGCTGGCCCTGCAGATCAGTGAGGTGATGGGCCAGTTCCTCCAGAAGTTCCCTCAGTTCAGACAGATTCTGTTGATTGGAGGGAGCAACCCCATTGAGGATGTGGAGAAGTTTAAGGAACAGGGGGCCAACATATTGATTGCCACCCCGGGGCGTCTGGAGGACATGTTCAGAAGGAAGGCAGACGGTCTGGACCTGGCCTTGTCAGTCAAGTTTCTGGAGGTCCTGGTCCTGGATGAGGCTGACCGCCTTCTGGATATGGGCTTTGAGGCCAGtCTGAATGTTATCCTGGGGTACCTCCCTAAGCAGCGTCGTACAGGTCTGTTTTCAGCCACTCAGACTCAGGAGCTGGAAAAGCTGGTGAGAGCTGGTCTCAGGAACCCTGTACGAATCACAGTGAAGGAGAAGGGCGTGGCCGCCAGCTGCACCCAGAAAACACCTGCCAGGCTCTGCAActactacacaATCTGCAGAGCGGAGGACAAGTTTAACAGTCTGGTAGCGTTTCTTAGACAACACAAACATGAGAAACAGCTGGTGTTCTTCAGTACATGTGCGTGTGTGGAGTACTTTGGCCGAGCCTTGGAGGCCCTGATTAAGAGCGTCACCATCCACTGCATCCACGGCAAGATGAAACACAAACGCAACAAGATCTTCTCAGAGTTTAGGAGCCTAAAGAGTGGTATCCTGGTGTGTACTGACGTCATGGCCAGAGGCATTGATATCCCAGAAGTCCACTGGGTATTGCAGTACGACCCCCCTAGTTGTGCCAGTGCCTTTGTGCACCGGTGTGGACGGACTGCGCGCATTGGTAACAAAGGCAACGCCACAGTCTTCCTGCTCCCCATGGAGGAATCTTACGTTACCTTCCTGTCCATCAACCAGAAGTGTCCTCTGGAGCAGATGGCCCCAGTGAGTGACGTGGTGGATGTTCTGCCCAAGGTGAAGGCCCTGGCTCTGGCAGACCGGGCCATGTTCGACAGGGGCATGAGGGCATTCGTCTCCACCGTACAGGCCTACGCCAAACACGAGTGCAGCCTCATTTTCAGGGTCAAAGATCTGGACTTTGTTGCGCTGGCCCGTGGCTTCGCCCTCCTCCGCATGCCCAGGATGCCCGAGCTGAAAGGGAAGAACTTCCCTGACTTCATAGAAACGACCATAGACACAGACAATATCCGCTACAAGGACAAGCAGCGGGAGAAGCTGAGGCAGAAGCTGCTGATTGAGctaaaggagaagagggaggaaagggCCGCTGCCCCCAAGAGACACAACGATAAGAACAAAGCCTGGTCCAGACAGAAGAACAGGAAGGACCGCAGGAGGAAGACTGCTGCCAAGAGGAACCGGGATGAGGGCTCGGAAATGGACGATGAGGACATGAAGGAGCTGTTGAAGGACACTCGTCTCCTGAAGAGATTGAAGAAGGGACAGATCAGCGAGGAGGACTTTGAGAAACAGGTGACAGCAGGACCGAAGAGCCAGAGGAAGACAGCAGCAGGCCCCTCAGAGGACCCACCCAGCTCAGCGGGAGAGGAGGACGAATGAAACAACACACCTGTCAGTGTTTCCCCCCGATGTTCTAGCAGCAGGTCAGGCTGTCCCACCTGGCCCTGTTTACCATGGAAAAAAACAGAACATGTTATATTTTAGGGGGGCCTTTATGCCCCGCCTACAGAACAACCATAGGGGAAATACTGCCTGTTACAATAAGACGCAGGTCAGAACCACCCATTGAACTTTGAATACACTTTTAAAATAGAGCCAACTGTTTTACATCTATTATTCCGTTATGAACCAGAGAGATACATCACCTTTCAGGAATGTTATGTATACAGTGTAAAGTTATGCGTATCGCCATATTTTGTAATTAACAATCTATAAAAGATACAAACTGATCCCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14809 DDX55, SPB4; ATP-dependent RNA helicase DDX55/SPB4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1189340 lncRNA downstream 10789 17258568 ~ 17258888 (-) True G1043640
TU1189335 lncRNA downstream 21385 17247521 ~ 17248292 (-) True G1043635
TU1189336 lncRNA downstream 23510 17244807 ~ 17246167 (-) True G1043636
TU1189330 lncRNA downstream 25917 17243497 ~ 17243760 (-) True G1043633
TU1189260 lncRNA downstream 29786 17236467 ~ 17239891 (-) True G1043567
TU1189354 lncRNA upstream 8727 17283825 ~ 17284118 (-) True G1043654
TU1189343 lncRNA upstream 13487 17288585 ~ 17288920 (-) True G1043643
TU1189371 lncRNA upstream 52865 17327963 ~ 17328188 (-) True G1043671
TU1189376 lncRNA upstream 62788 17337886 ~ 17338096 (-) True G1043676
TU1189378 lncRNA upstream 63249 17338347 ~ 17338893 (-) True G1043678
XM_021622851.2 mRNA downstream 13403 17250072 ~ 17256274 (-) True LOC110537086
LOC110537083 mRNA downstream 89191 17179487 ~ 17180486 (-) True LOC110537083
XM_036939648.1 mRNA downstream 131703 17135946 ~ 17137974 (-) False LOC118937877
XR_005035291.1 mRNA downstream 131703 17135946 ~ 17137974 (-) True LOC118937877
XM_021622839.2 mRNA downstream 140498 17113455 ~ 17129179 (-) True LOC110537079
XM_021622855.1 mRNA upstream 148 17275246 ~ 17279138 (-) False LOC110537089
XM_021622856.1 mRNA upstream 148 17275246 ~ 17279138 (-) True LOC110537089
XM_036937081.1 mRNA upstream 227106 17502204 ~ 17524387 (-) False LOC110537091
XM_036937083.1 mRNA upstream 227106 17502204 ~ 17524387 (-) False LOC110537091
XM_036937084.1 mRNA upstream 227106 17502204 ~ 17524387 (-) True LOC110537091
TU1189216 other downstream 201792 17065321 ~ 17067885 (-) False LOC110537077
TU1189218 other downstream 202549 17065321 ~ 17067128 (-) True LOC110537077
TU1188573 other downstream 724951 16533617 ~ 16544726 (-) True LOC110537061
TU1188176 other downstream 941563 16324963 ~ 16328114 (-) False LOC110537059
TU1188178 other downstream 941563 16324963 ~ 16328114 (-) True LOC110537059
TU1190341 other upstream 421031 17696129 ~ 17697105 (-) True G1044482
TU1190533 other upstream 743006 18018104 ~ 18018758 (-) True G1044649
TU1190557 other upstream 781013 18056111 ~ 18058392 (-) True G1044671
TU1190582 other upstream 822465 18097563 ~ 18099722 (-) False G1044692
TU1190580 other upstream 822554 18097652 ~ 18099722 (-) True G1044692

Expression Profile