RNA id: XM_036937088.1



Basic Information


Item Value
RNA id XM_036937088.1
length 8082
RNA type mRNA
GC content 0.51
exon number 51
gene id LOC110537098
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17618250 ~ 17663678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCATAATTAAGAccttgtggctgtggtaactagttaCGGCCGTCTACTAGGCACCAACGTTGGGTGTTAACTTGTCCTCTTCGCAGCGGTAAAAGCTGTATAATGTTCTTACTACCCGTTTGTCTTGATTCGTAAACATGTCTGCAAAAGGAGTAGGAACGAGGGGTTTTTATTTCAACACTGTATTGTCCCTGGCGCGCTCTTTGGCCGCACACCGCCCAGCGCCGATAGATAAGGTCCAAAAGCTCCAATGCATGTGTCCAGTGGACTTCCGAGGGGTGTTCCAGCTGgacgagaggaggagggatgcGGTCCTAGCTCTGGGTATCTTCCTGGTCAAGTCTGACCTACAGCACAAAGACTCTATTGTCCCCTACCTGCTGGGGCTGCTGAAGGGACTTCCCAGAGTCCAGTGGATCGAAGAAAGCTCTGGAAGTAAAGGGCGGGATATCCTTCCGGTGGCAGAGaacttctgcttctgtctggtcactcttCTCTCAGACGTGGCCCAGCGAGATGACACCCTGCGAGGACAGATCGTGGAGGCCGTCCTGGACTTAATGCAGGTCCTGCTGGACATCTGCTTGAACTCAGAGGGACATGATAAAGaaTACCTGTGCAAGTACACTGTGCCCTGCTTGTTGGGTGTGGCCCGGGCCTTTGGTCGCTATAGCAACACGGAGGAGCCCCTGCTGTCCAAGCTGTTTCCGCGGGCGGAAGCCCCGCCAGTGTCCACTGGCAATGATGTCGACCCATCACGACGGCGCTCCTTCAACGACTTCCGCTCCATCATGCCTGCCTCGCTGCTCACAGTCTGTCAGGGAGACACCATCAGACGCAAAGGAAGCTCCGTGTCCAGCATATCACAACAGgccAGTCCAGAGAGAGCAGGACTCACCCCCAGCTCCCCAGCTGACCCCTCAGCACAGTACTTTGAAGgctccTATCTCCCTGATGGTAGTGCTGTGGACCCAGACTATTACTTCTCCACCATCAGTTCTAgtttctctgtgtctcctctgtttGCGGGCAGTGCCCAGGGAGAGTTTGACGTCCCTCTGGACGTTCTGCGCCAGCTCCTCAACATGGTTGAGCAGTTTGTCTCTGAATCCTTTCTGAAAACACTGGATAACACCCTGCAGGAACTTCTGGAGTTGAACCCAGGGATGCACCTGCACTATAGGACCTTCAGTGACCCTCTGTATGTGACCATCTTCAAGATGCTCAGAGACACGCTGTACAACCTGAAAGACCTGCAGACAGGCTATGTGAAGGAGGTTCATGACTTTGTGCTGAAGCAGTTCAGTAGTAGCCAGTCAGAGCTGCAGAGGATCCTACATGATGTAGATCACCTCCACAGTGAACTGAGTCCTCTGAAGCTACGCTGCCAGGCTAACGCTGCCTGTGTCGACCTCATGGTCTGGGCTGTCACTGAGGAGCAGGGAGCTGAGAACCTGTGTACCAAGCTGTCAGAGAAACTGCAGTCCAAGACGTCCAGTAAAGTTATCATCGCTCACATTCCCCTGCTCGTCTGCTGTCTACAGGGTTTGGGTCGTCTGTGTGAGCGGTTCCCGGTGGTGGCCCACTCTGTCACCACGTCTCTCAGAGACTTCCTGGTGGTCCCCTCTCCTGTCCTTGTAAAGCTGTACAAGTACCACAGCCAGAACACCACAGGGACTGGCGAGATCAAGATCCATGTGACCAATGAGCACTCCCAGTCTACGTTCAGTGCTCACGCTAATAAGAAGAGCCAGCCCTCCATGTACGAACAGCTCCGAGACATCTCCATTGACAACATCTGCAGGTGTCTGAAGGCAGGTCTGACTATGGACAGTGTTATAGTGGAGGCTTTCCTGGCCAGCCTGTCCAACCGTCTCTACATCTCTCAGGAGAATGACAAGGAGGCCCATCTGATCCCAGACCACACCATCAGAGCGCTGGGTCACATCGCGGTGGCTCTGAGGGACACGCCACGCGTCATGGAGCCCATCCTGCAGATCCTACAGCAGAAGTTCTGCCAGCCACCGTCACAGCTAGACGTACTCATTATAGATCAGCTGGGATGCATGGTCATCACTGGGaatcaATATATCTACCAGGAGGTGTGGAACCTGTTCCAGCAGATCAGTGTGAAGGCCTCCTCCATGGTCTACTCCACCAAGGACTACAAGGACCATGGATACAGACACTGTTCCCTGGCTGTGATCAATGCATTAGCTAACATAGCTGCCAACCTGGCAACAGAGCAGATGGTTGATGAGTTGCTGGTCAACCTACTGGAGCTGTTTGTCCAGCTGGGACTGGAGGGAAAGAGGGCCAGCGAGAGGGCCTCGGACAAGGGCCCTGCACTGAAGgCGTCGAGCAGTGCTGGAAACCTTGGAGTACTCGTTCCTGTTATTGCTGTGctgaCGAAGCGTCTGCCGCCCATCAAGGAAGCGAAGCCTCGTCTACAGAAGCTGTTCAGAGACTTCTGGCTCTACTCTGTGGTGATGGGTTTCGCTGTTGAGGGATcagGTCTGTGGCCAGAGGAGTGgtatgagggagtgtgtgagATCGCCACCAAGTCTCCCCTCCTCACCTTCCCCAGTGGAGAACCTCTACGCTCTGAACTACAGTACAACTCTGCCCTGAAGAATGACACCGTCACAGCGGCGGAGCTGAATGACCTGAGGAGCACCATTATAAACCTGCTAGATCCTCCTCCTGAGGTGTCTGCTCTCATCAACAAACTAGACTTCGCCatgtctacctacctactgtctgtctacaggCTGGAGTACATGAGGATGCTGCGTGCTCTGGACTCTGACCGTTTCTCTTCTCTCACCAGGATGCTGCGCGCTCTGGACTCTGACCGTTTCCAGGTGATGTTCCGCTACTTTGAGGACAGAGCCATCCAGAAGGACAAGTCTGGTATGATGCAGTGTGTGATAGCGGTGGGGGACAAGGTGTTTGAGGTCTTCCTACACATGATGGCTGAGAAGccGAAGACTAAAGCCCATGAGGAGGAGTTGGAGCGCCACGCTCAGTTCCTATTGGTCAACTTCAACCACGTCCACAAGAGGATCCGTAGGGTGGCCGACAAATACCTGTCAGGTCTGGCCGAAACGTTCCCTCACCTACTGTGGAGTGGCCGTGTACTGAAGACGATGCTGGACATCCTGCAgactctctccctttccctcagtGCAGACATCCATAAGGACCAGCCTTACTATGACATCCCAGACACCCCCTACAGGATCACTGTGCCAGACACATACGAGGCCAGAGAGAGCATAGTGAAGGACTTTGCTGCTCGCTGCGGGGAGATCCTGAAGGAGGCCATGAAGTGGGCCCCCTCTGTCACCAAGTCACACCTacagGAGTACCTAAACAAGCATCAGAACTGGGTGTCCGGTCTGTCCCAGCACACTGGCCTGGCCATGGCTACAGAGAGCATCCTGCACTTCGCTGGCTACAACAGACAGAGCACTACACTAGggATCACCCAGCTGACAGAAAGGCCAGCCTGTGTGAAGAAGGACTACTCCAACTTCATGGCTTCACTCAACCTGAGAAACCGCTATGccggagaggtggCAGGTATGATCCATTTCAGTAAGGCAGTGCGTAGCCAGTCAGACCTGTCCAGGCTGATGGTCGGACAGACAACAGAGGCTCTAGATGCCCAGAACCCTGAGTCCTTCACTGAGAACATGTTCAAACTGGCAGCACTGCTCATCAGCactaaagaatgTGATCCTCAGCTGCTGCACCACCTGTGTTGGTCTCCTCTGAAGATGTTTACAGAACACGGCATGGAGACGGCTATCGCCTGCTGGGAGTGGCTGCTGGCTGCTCGCACAGGAGTAGAGGTCCCGTTCATGCGTGAGATGGCGGGGGCGTGGCAGATGACAGTGGAGCTGAAGATGGGCTTGTTCTCTGATGCTCAGGTGGAGGCTGATCCCCTAGCAGCCTCGGAGGAGAGTCAGCCTGTCCCTTGCCCCCCCGCCGTCACACCTCACTGCATTtggatagagtTCTTGGTCCAGAGGTTTGAGATAGCTAAGTATTCCAGTGAAGACCAGGTGGAGATATTCGGCAGCCTATTACAACGCTCGCTCTCCCTCAACGTGGGCGGAGCTAAGAGCAACCTCAACCGCCACGTAGCCGCCATCGGACCCCGCTTCAggctccTTACTCTGGGTCTAGCACTGCTCCATTCTGACGTAGTCACCAACGCCACCATCAGGAATGTCCTCCGAGAGAAGATCTACTCCACCGCCTTCGACTACTTcagTGCCCCCCCTAAGTTCCCTACCCAGGGGGACAAGCGTCTGCGTGAGGACATCAGCTTCATGATCCGTTTCTACGCCAGCATCCTGTCAGACAAGAAGTACCTGGCGGCGTGCCAGCTGGTCCCTCCCGACAACCAGGACCCGTCATTGAACAGTCTGTCAGTGATGACAGCCCAGGAGCCCAGGAGCACCATGTCTCATGACTCCCGCTCCCAGCAGAGTGGCCAGAGTGGCTGGATCAACACCTACCCTCTGTCCTCTGGCATGTCCACCGCCTCCAAGAAGTcagGCATGTCTAAGAAGAGTAACAGAGGGACTCAGCTCCATAAGTACTACATGAAGCGTCGGACCCTGCTGCTGGCCTTACTGgCCAGTGAGATTGAGCGGTTGACTACCTGGTACAACCCTCTGTGCACCCAGGAGTTGGCCATCGCTACAGAACAGTCCGTGGAGACCAGCATCGCCAACTGGAGGTCCAAGTACATCAGCCTCAGTGAGAAACAGTGGAAAGACAACGTCAACCTGGCCTGGGGTATATCTCCTTACCTGGCTATGCAGCTACcagccagGTTTAAGAACGATGTGATCGTGGCTGAGGTGACCCGGCTGGTAAGGCTGGACCCTGGAGCGGTCAGCGACGTACCTGAGGCTGTCAAGttcctggTGACATGGCACACCATTGATGCAGATTCTCCAGAGCTGAGTCATATCCTGTGTTGGGCTCCTGCTGACCCTCCCACCGGCCTGTCCTACTTCTCTTCCATGTACCCCCCGCACCCCCTTACTGCTCAGTACGGGGTCAAAGTACTACGGTCCTTTCCTCCGGATGCCATCCTGTTCTACATTCCTCAGATTGTTCAGGCCCTGCGCTATGACAAGATGGGGTATGTGAGGGAGTACATCCTGTGGGCGGCCCAGAAGTCTCAGCTGTTGGCCCACCAGTTCATCTGGAACATGAAGACTAACATCTACCTGGACGAGGAGGCACACCATAAAGACCCCGACATCGGGGATCTGCTGGAGGAGATGGTTGAGGAGATAATAGGTGCTCAGTCTGGTGCAGCTAAAGACTTCTTCCAGAGAGAGTTTGACTTCTTTGACAAAATCACCAACGTATCTGCCATCATCAAGCCCACCCcaaagggagatgagaggaagagggCCTGTCTCAAAGCTCTGTCTGACATCAAAGTCCAGCAAGGCTGCTACCTGCCCAGTAATCCAGAGGCCATCGTATTGGACATTGACTACAAGTCTGGAACACCAATGCAGAGTGCTGCCAAGGCCCCGTACCTGGCTAAGTTCAAGGTGAAGCGTTGTGGGGTCAGTGAGCTGGAGAAAGAGGGTCTGCGTTGTCAGACTGACTCCCAGGACGTGGAGTCGGGTGAAGATGTAGCTCGCAGGATCGTCTGGCAGGCCGCCATCTTTAAAGTGGgagacgactgcagacagGACATGCTGGCTCTCCAGATCATTGGTCTGTTTAAGAACATCTTCCAACTTGTGGGTCTGGACCTGTTTGTGTTTCCCTACAGAGTTGTGGCTACTGCCCCTGGGtgtgGTGTGATTGAGTGTATCCCAGACTGTAAATCCCGTGACCAactgggcagacagacagactttggGATGTATGACTACTTCAGAAACCAGTATGGAGATGAGTCCACTCTGGCCTTCCAGAAGGCGAGGTATAACTTCATCCGTAGTATGGCTGCTTACAGCCTGCTGCTCTTCCTGCTACAAATCAAAGATAGACACAACGGGAACATCATGCTGGACAGCAAGGGACACCTTATCCACATAGACTTTGGCTTCATGTTTGAGAGTTCTCCTGGTGGTAACCTGGGCTGGGAGCCGGACATCAAGCTGACCGATGAGATGGTGATGATCATGGGAGgcaagatggaagccactccctTCAAATGGTTCATGGAGCTGTGTGTCAGGGGTTACCTGGCTGTCAGGCCCTACATGGATGCAGTGGTGTCTCTAGTCACTCTGATGCTGGACACTGGACTACCGTGCTTCAGAGGACAGACCATCAAACTGCTCAAGCAGCGGTTCAACCCCAGTATGAGTGAGAAGGAGGCGGCTGCTTTCATCATCAAGGTCATCCAGAGCTGCTTCCTCAGCAGCAGGAGCAAGACCTATGATATGCTTCAGTATTACCAGAACCAGATCCCATACTGAAGACCTGCTGCAATATTATCACATACCTGTCTGATATGAGTTCTTATTCCTTATATAGGCAGTAACCTCTTCTTTAGACTATGTAAGGTCAGAGGTTGTCCTATATACTAAGTAATATCCTTGGCTTGCTAGCCAGCTAGCGTCCAGCAACTTATGCACTTTATAGATCGCTGTATTTCACCCACCTGATTGAACCCTGATCAAGAGCTGTTATGCTAGACTAGAGAAATCACACTAACCAATCAACCAAACAACCAATCACACAACCTGTAACTGAACTCCAATACAATCAGCAAATCCCACGATCATAATCCATATATCACGTATCAATGTCTTGATGCAATCACATAGTGGATGTGAGTGTCCCCGTCCTGTAGTCAAAAGTGATGAGTAGATATTTTCTCTGGGGACATTTCTAATGGTGGAGCTAGTGACTATATCTGTCTTGAGTCAGTCACATACTGTGTGTGTATCCGCCCCAAGGTTGGTGGGTCCAGTACAGAATAAACCAGTGTTGTTTACCAAATAACCCACTAACTCTGCATGTCTCATGACCAGACCTTCTAGCAGTTACATGGATTTAGTAGCATTCTTAAACAGGTGTGTGTGAGATTCTGTTTGGAGACATTCCTCTTTCTGCACAAAGAAAGATTTTATTCACCTTCAATCCTGTAGTTGAATCTCCGGGATTTGTGTTTAGTATTACAATGGTGGTGGTGATTTTACAATGACAACGAAGACCCAAAAAGCCATTTCTCTAAGCGTTGGCACAAACAGAAGGGTGGTATTACATGACAACTATACTCCTCTGATGTTATGTTAGACGTTACCTTCTTAATGTGTGTCAACATAGGAGATTACTGTCATAATCTCTTCAGAAACCCTTCTGTTTATGAATATATTTTACTTGGTAGTCTGTAAAGATAATTCATCTTACATCTATCATTTTAGATGAGATGGTATGTATTATTTTTGATCTGAATGGATATGTTATTATTTTACTTAGGGTATTTCATCTTAAACATCCATGTATGTATTACAGAGTATGTTTGTAATATAACGTGGGCGGCAGGTCAGCTAGCGGCGAggaaccgaaaggtcgctggtttgaatgcCCCCAGCTGACTAGGTGAGGTATCtaccaatgtgcccttgagcaagacacttattcatagtgacttacaggagcaattagggttaggagtgtctgctaaatgagtaGAAATTGACATGTGAAGTATATTACGGTGTACTGTATTTCAGGGCTCTACAGTGTAACCATTTTACTCACATATGCGCCTAAATGTTCTGCTGTGTGACCTGGAGGTTAAATGTAGGCGTACCAGTGCACCTAGAAAAAttttaaggattctagctttaatacttcaaatatttttcattgtgcGTATTAATTTCTTTGTGTGCTTACATTTTTCAACTTAGGTGCGCACATGCTCATTGTAAAAAAAGATCAGCGTAGAGCCCTGCTATGTACTGTAGGTTGTAATGGCTAACAGGACATGCATTTCAGACCAATGGGATGATAAAGAGCTGTTCCATTATTAGTATTTTTATTGGACTGTTGTATTGTGATAAAGTACTGAAACATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1189398 lncRNA upstream 23678 17558898 ~ 17594573 (+) True LOC110537094
TU1189467 lncRNA upstream 207582 17410378 ~ 17410669 (+) True G1043752
TU1189379 lncRNA upstream 278889 17339135 ~ 17339362 (+) True G1043679
TU1189377 lncRNA upstream 279121 17338732 ~ 17339130 (+) True G1043677
TU1189374 lncRNA upstream 288325 17329676 ~ 17329926 (+) True G1043674
TU1189557 lncRNA downstream 3602 17667280 ~ 17667557 (+) True G1043827
TU1189749 lncRNA downstream 18162 17681840 ~ 17689055 (+) True G1043997
TU1189754 lncRNA downstream 28341 17692019 ~ 17692284 (+) True G1043999
TU1189768 lncRNA downstream 42544 17706222 ~ 17706624 (+) True G1044013
TU1189761 lncRNA downstream 55103 17718781 ~ 17718986 (+) True G1044006
XM_021622867.2 mRNA upstream 21116 17579225 ~ 17597135 (+) False LOC110537097
XM_036937087.1 mRNA upstream 21116 17585842 ~ 17597135 (+) True LOC110537097
XM_021622863.2 mRNA upstream 59207 17543370 ~ 17559044 (+) False LOC110537094
XM_036938714.1 mRNA upstream 79474 17529711 ~ 17538777 (+) True LOC110536805
XM_021622860.2 mRNA upstream 116152 17468311 ~ 17502099 (+) True LOC110537092
XM_021622870.1 mRNA downstream 50482 17714160 ~ 17717729 (+) True LOC110537101
XM_036937097.1 mRNA downstream 167544 17831222 ~ 17858119 (+) False LOC110537103
XM_021622872.2 mRNA downstream 167545 17831223 ~ 17858119 (+) False LOC110537103
XM_021622881.2 mRNA downstream 167545 17831223 ~ 17858119 (+) False LOC110537103
XM_021622882.2 mRNA downstream 167545 17831223 ~ 17858119 (+) False LOC110537103
TU1189097 other upstream 339133 17275268 ~ 17279118 (+) True G1043449
TU1188864 other upstream 626906 16909786 ~ 16991345 (+) True G1043245
TU1186942 other upstream 2009799 15604625 ~ 15608452 (+) True G1041576
TU1186834 other upstream 2100489 15497558 ~ 15517762 (+) False G1041494
TU1189757 other downstream 57415 17721093 ~ 17729254 (+) True G1044002
TU1189820 other downstream 222975 17886653 ~ 17887917 (+) True G1044056
TU1190028 other downstream 412124 18075802 ~ 18077300 (+) True G1044201
TU1190095 other downstream 632252 18295930 ~ 18296402 (+) True G1044265
TU1190163 other downstream 728968 18392646 ~ 18393341 (+) True G1044317

Expression Profile


XM_036937088.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
End of interactive chart.

XM_036937088.1 Expression in each Bioproject

Bar chart with 4 bars.
XM_036937088.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.